biologia plantarum

International journal on Plant Life established by Bohumil Nìmec in 1959

Biologia plantarum 59:220-226, 2015 | DOI: 10.1007/s10535-015-0507-0

Molecular characterization of several Wx alleles in durum wheat

R. Ortega1, C. Guzmán1, J. B. Alvarez1,*
1 Departamento de Genética, Escuela Técnica Superior de Ingeniería Agronómica y de Montes, Edificio Gregor Mendel, Universidad de Córdoba, CeiA3, Córdoba, Spain

The Wx gene, which encodes waxy proteins, is the sole gene responsible for amylose synthesis in the wheat seed endosperm. In this study, we characterized, at the molecular level, several Wx alleles in durum wheat (Triticum turgidum L. ssp. durum Desf.) that had previously been catalogued at the protein level. Our data show a misclassification of the alleles in both Wx genes: Wx-A1 alleles from Blanqueta (Wx-A1a) and Astrodur (Wx-A1b) have been reclassified as Wx-A1a and Wx-A1h, respectively. A sequence comparison of the Wx-B1e allele shows that there were up to five different alleles under this denomination, which confirms that the protein analysis by SDS-PAGE separation needs to be combined with the PCR amplification-sequencing analysis in order to obtain a correct classification of the alleles, which will facilitate their use in wheat quality improvement.

Keywords: PCR amplification; SDS-PAGE; Triticum turgidum, waxy proteins
Subjects: Wx alleles; waxy proteins; amylose; seed endosperm; amino acids; durum wheat

Received: August 13, 2014; Revised: January 5, 2015; Accepted: January 7, 2015; Published: June 1, 2015  Show citation

ACS AIP APA ASA Harvard Chicago IEEE ISO690 MLA NLM Turabian Vancouver
Ortega, R., Guzmán, C., & Alvarez, J.B. (2015). Molecular characterization of several Wx alleles in durum wheat. Biologia plantarum59(2), 220-226. doi: 10.1007/s10535-015-0507-0
Download citation

Supplementary files

Download filebpl-201502-0003_S1.pdf

File size: 284.6 kB

References

  1. Ainsworth, C., Clark, J., Balsdon, J.: Expression, organisation and structure of the genes encoding the waxy protein (granule-bound starch synthase) in wheat. - Plant. mol. Biol. 22: 67-82, 1993. Go to original source...
  2. Baldwin, P.M.: Starch granule-associated protein and polypeptides: a review. - Starch/Stärcke 53: 475-503, 2001. Go to original source...
  3. Chao, S., Sharp, P.J., Worland, A.J., Warham, E.J., Koebner, R.M.D., Gale, M.D.: RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. - Theor. appl. Genet. 78: 495-504, 1989. Go to original source...
  4. Divashuk, M.G., Klimushina, M.V., Karlov, G.I.: Molecular genetic characteristics of the Wx-B1e allele from common wheat and applicability of the DNA markers for its identification. - Russ. J. Genet. 47: 1428-1432, 2011. Go to original source...
  5. Goldsbrough, A.P., Bulleid, N.J., Freedman, R.B., Flavell, R.B.: Conformational differences between two wheat (Triticum aestivum) 'high-molecular-weight' glutenin subunits are due to a short region containing six amino acid differences. - Biochem. J. 263: 837-842, 1989. Go to original source...
  6. Guzmán, C., Alvarez, J.B.: Molecular characterization of a novel waxy allele (Wx-Au1a) from Triticum urartu Thum. ex Gandil. - Genet. Resour. Crop Evol. 59: 971-979, 2012. Go to original source...
  7. Guzmán, C., Caballero, L., Alvarez, J.B.: Variation in Spanish cultivated einkorn wheat (Triticum monococcum L. ssp. monococcum) as determined by morphological traits and waxy proteins. - Genet. Resour. Crop Evol. 56: 601-604, 2009. Go to original source...
  8. Guzmán, C., Caballero, L., Alvarez, J.B.: Molecular characterisation of the Wx-B1 allelic variants identified in cultivated emmer wheat and comparison with those of durum wheat. - Mol. Breed. 28: 403-411, 2011. Go to original source...
  9. Guzmán, C., Caballero, L., Martín, L.M., Alvarez, J.B.: Waxy genes from spelt wheat: new alleles for modern wheat breeding and new phylogenetic inferences about the origin of this species. - Ann. Bot. 110: 1161-1171, 2012. Go to original source...
  10. Guzmán, C., Caballero, L., Moral, A., Alvarez, J.B.: Genetic variation for waxy proteins and amylose content in Spanish spelt wheat (Triticum spelta L.). - Genet. Resour. Crop Evol. 57: 721-725, 2010. Go to original source...
  11. Klimushina M.V., Kroupin P.Y., Divashuk M.G., Karlov G.I.: [Molecular characterization of Wx-B1e allele of common wheat]. - Izv. Timirjazevsk. Selskokhoziaistvennoi Akad. 5: 69-76, 2013. [In Russ.]
  12. McIntosh, R.A., Yamazaki, Y., Dubcovsky, J., Rogers, W.J., Morris, C., Appels, R., Xia, X.C.: Catalogue of gene symbols for wheat. - http://www.shigen.nig.ac.jp/wheat/komugi/genes/macgene/2013/GeneSymbol.pdf, 2013.
  13. Morris, C.F., Konzak, C.F.: Registration of hard and soft homozygous waxy wheat germplasm. - Crop Sci. 41: 934-935, 2001. Go to original source...
  14. Nakamura, T., Vrinten, P., Saito, M., Konda, M.: Rapid classification of partial waxy wheats using PCR-based markers. - Genome 45: 1150-1156, 2002. Go to original source...
  15. Nieto-Taladriz, M.T., Rodriguez-Quijano, M., Carrillo, J.M.: Polymorphism of waxy proteins in Spanish durum wheats. - Plant Breed. 119: 277-279, 2000. Go to original source...
  16. Ortega, R., Alvarez, J.B., Guzmán, C.: Characterization of the Wx gene in diploid Aegilops species and its potential use in wheat breeding. - Genet. Resour. Crop Evol. 61: 369-382, 2014. Go to original source...
  17. Shariflou, M.R., Sharp, P.J.: A polymorphic microsatellite in the 3' end of 'waxy' genes of wheat, Triticum aestivum. - Plant Breed. 118: 275-277, 1999. Go to original source...
  18. Sharma, R., Sissons, M.J., Rathjen, A.J., Jenner, C.F.: The null-4A allele at the Waxy locus in durum wheat affects pasta cooking quality. - J. Cereal Sci. 35: 287-297, 2002. Go to original source...
  19. Stacey, J., Isaac, P.: Isolation of DNA from plants. - In: Isaac, P.G. (ed.): Methods in Molecular Biology: Protocols for Nucleic Acid Analysis by Non-Radiactive probes. Pp. 9-15. Humana Press, Totowa 1994. Go to original source...
  20. Sumesh, K.V., Sharma-Natu, P., Ghildiyal, M.C.: Starch synthase activity and heat shock protein in relation to thermal tolerance of developing wheat grains. - Biol. Plant. 52: 749-753, 2008. Go to original source...
  21. Urbano, M., Margiotta, B., Colaprico, G., Lafiandra, D.: Waxy proteins in diploid, tetraploid and hexaploid wheats. - Plant Breed. 121: 465-469, 2002. Go to original source...
  22. Vanzetti, L.S., Pflüger, L., Bainotti, C.T., Jensen, C., Helguera, M.: Identification of a null allele at the Wx-A1 locus in durum wheat (Triticum turgidum L. ssp durum Desf.). - Plant Breed. 129: 718-720, 2010. Go to original source...
  23. Vrinten, P., Nakamura, T., Yamamori, M.: Molecular characterization of waxy mutations in wheat. - Mol. gen. Genet. 261: 463-471, 1999. Go to original source...
  24. Yamamori, M., Guzmán, C.: SNPs and an insertion sequence in five Wx-A1 alleles as factors for variant Wx-A1 protein in wheat. - Euphytica 192: 325-338, 2013. Go to original source...
  25. Yamamori, M., Nakamura, T., Endo, T.R., Nagamine, T.: Waxy protein deficiency and chromosomal location of coding genes in common wheat. - Theor. appl. Genet. 89: 179-184, 1994. Go to original source...
  26. Yamamori, M., Nakamura, T., Nagamine, T.: Polymorphism of two waxy proteins in the emmer group of tetraploid wheat, Triticum dicoccoides, T. dicoccum, and T. durum. - Plant Breed. 114: 215-218, 1995. Go to original source...
  27. Yamamori, M., Quynh, N.T.: Differential effects of Wx-A1, - B1 and -D1 protein deficiencies on apparent amylose content and starch pasting properties in common wheat. - Theor. appl. Genet. 100: 32-38, 2000. Go to original source...




-