Multalin

Input sequences:

 Enter sequences to align (use FASTA format):

Align sequences

Alignment Options:

  Gap value:

 Gap lenght value:

  Gap at extremities:   

0 1 2 3

  Scoring method:

absolute alignment score percentage alignment score percentage of identical pairs   

  One iteration only:

  Symbol comparison table:

blosum62 dayhoff altdna dna identity genetiq

  Unweighted sequences:

   (gives all sequences a weight of 1.0.)

Output Options:

 Upercase consensus:

10 20 30 40 50 60 70 80 90  (minimal %)

Lowercase consensus:

10 20 30 40 50 60 70 80 90  (minimal %)

Output sequence ordering:  

as input as aligned

Color sequence by:  

% identity residue

Characters per line:  

500 250 125 80 70 60 50 40 30

Show consensus : 

Scaling for graphical output:

0.5 1 1.5 Auto 2 3 4 points