Highly parallel direct RNA sequencing on an array of nanopores
- PMID: 29334379
- DOI: 10.1038/nmeth.4577
Highly parallel direct RNA sequencing on an array of nanopores
Abstract
Sequencing the RNA in a biological sample can unlock a wealth of information, including the identity of bacteria and viruses, the nuances of alternative splicing or the transcriptional state of organisms. However, current methods have limitations due to short read lengths and reverse transcription or amplification biases. Here we demonstrate nanopore direct RNA-seq, a highly parallel, real-time, single-molecule method that circumvents reverse transcription or amplification steps. This method yields full-length, strand-specific RNA sequences and enables the direct detection of nucleotide analogs in RNA.
Comment in
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Native RNA-Sequencing Throws its Hat into the Transcriptomics Ring.Trends Biochem Sci. 2018 Apr;43(4):225-227. doi: 10.1016/j.tibs.2018.02.007. Epub 2018 Mar 1. Trends Biochem Sci. 2018. PMID: 29503177
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