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Study on the communities of endophytic fungi and endophytic actinomycetes from rice and their antipathogenic activities in vitro

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Abstract

The populations of endophytic fungi and actinomycetes from four rice cultivars in the Panyu district (Site 1) and Wushan district (Site 2) in Guangdong province, South China, were studied. The preponderant endophytic fungi and actinomycetes isolated belonged to Fusarium and Streptomyces respectively. The incidence of Streptomycetes griseofuscus ranged from 36.1 to 69% out of all the different rice cultivars from the two sites. It is the commonest population of endophytic actinomycetes, and constituted the greatest part of all the antagonistic communities. The distributions of endophytic fungi and actinomycetes in roots and leaves were different, endophytic fungi from leaves were diverse, some were organ-specific. More diverse endophytic actinomycetes were isolated from roots than from leaves. The endophytic fungi isolated from rice in Site 2 were more diverse than that in Site 1. The diversity of the endophytic actinomycetes, however, was less than that in Site 1. Acid soil in Site 2 is ideal for the growth and colonization of fungi while the alkaline soil in Site 1 is better for the growth and colonization of actinomycetes. The results suggested that differences in the chemical composition of soil could influence the endophytic microbial communities of rice plants. The endophytic fungi and actinomycetes isolated from poor-growing seedlings and susceptible rice cultivars were more abundant than that the disease-resistant counterparts. In the dual culture and activity detection of the metabolites, 41.2% of all the isolated endophytic fungi showed antagonism to rice pathogens. Fifty percent of all the isolated endophytic actinomycetes were antagonistic to those pathogens. The percentage of Streptomyces griseofuscus and hygroscopicus reached 55.4 and 21.4% of all the active actinomycetes.

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References

  • Barraquio, W.L., Revilla, L. & Ladha, J.K. 1997 Isolation of endophytic diazotrophic bacteria from wetland rice. Plant and Soil 194, 15–24.

    Article  CAS  Google Scholar 

  • Bayman, B.P., Lebron, L.L., Tremblay, R.L. & Lodge, D.J. 1997 Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae). The New Phytologist 135, 143–149.

    Article  Google Scholar 

  • Breen, J.P. 1994 Acremonium endophyte interactions with enhanced plant resistance to insects. Annual Review of Entomology 39, 401–423.

    Article  Google Scholar 

  • Bush, L.P., Wilkinson, H.H. & Schardl, C.L. 1997 Bioprotective alkaloids of grass-fungal endophyte symbioses. Plant Physiology 114, 1–7.

    CAS  Google Scholar 

  • Cao, L.X. 2003 Studies on Populations and Functional Diversity of Endophytic and Marine Microorganisms. PhD thesis, Zhongshan University, Guangzhou, China.

    Google Scholar 

  • Cao, L.X., Tian, X.L. & Zhou, S.N. 2003 Isolation of endophytic fungi and actinomycetes from Banana (Musa paradisiacal) Plants. Acta Scientiarum Naturalium Universitatis Sunyatseni 42, 70–73.

    CAS  Google Scholar 

  • Cao, L.X., You, J.L. & Zhou, S.N. 2002 Endophytic fungi from Musa acuminata leaves and roots in South China. World Journal of Microbiology and Biotechnology 18, 169–171.

    Article  Google Scholar 

  • Clay, K. & Holah, J. 1999 Fungal endophyte symbiosis and plant diversity in successional fields. Science 285, 1742–1745.

    Article  CAS  Google Scholar 

  • Coombs, J.T. 2002 ScienceNow! The national science forum, 20–22 August. (www.abc.net.au/science/news).

  • EIzik, K.M. 1985 Symbiotic organism associated with plant part of MAR and no-MAR cotton. Phytopathology 75, 1344–1347.

    Google Scholar 

  • Fisher, P.J. & Petrini, O. 1992 Fungal saprobes and pathogens as endophytes of rice (Oryza sativa L.). The New Phytologist 120, 137–143.

    Article  Google Scholar 

  • Gonzales, A.T., Dalisay, T.U. & Telan, I.F. 2000 Endophytic fungi in rice leaves. In The 31st Anniversary and Annual Scientific Convention of Pest Management Council of the Philippines, 3–6 May, Baguio City, Philippines.

  • Miller, S.L. 1995 Functional diversity in fungi. Canadian Journal of Botany 73(Suppl. 1), S50–S57.

    Google Scholar 

  • Peters, S., Draeger, S., Aust, H.-J. & Schulz, B. 1998 Interactions in dual cultures of endophytic fungi with host and nonhost plant calli. Mycologia 90, 360–367.

    Google Scholar 

  • Quaroni, S., Saracchi, M. & Signorini, E. 1997 Improvement of crop production induced by a root endophytic Streptomycetes. 10th Congress of the Mediterranean Phytopathological Union, Montpellier (France) 1–5, June. pp. 449–452.

  • Redman, R.S., Freeman, S., Clifton, D.R., Morrel, J., Brown, G. & Rodriguez, R.J. 1999 Biochemical analysis of plant protection afforded by a nonpathogenic endophytic mutant of Colletotrichum magna. Plant Physiology 119, 795–804.

    Article  CAS  Google Scholar 

  • Reiter, B., Schwab, H. & Sessitsch, A. 2002 Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica. Applied and Environmental Microbiology 68, 2261–2268.

    Article  CAS  Google Scholar 

  • Ruan, J.S., Liu, Z.H., Liang, L.N. & Yang, D.C. 1990 Study and Application of Actinomycetes. pp. 1–18 Beijing: Bios Scientific Publishers Limited ISBN 7-03-001499-5.

    Google Scholar 

  • Sardi, P., Saracchi, M., Quaroni, S., Petrolini, B., Borgonovi, G.E. & Merli, S. 1992 Isolation of endophytic Streptomyces strains from surface-sterilized roots. Applied and Environmental Microbiology 58, 2691–2693.

    Google Scholar 

  • Schulz, B., Wanke, U. & Draeger, S. 1993 Endophytes from herbaceous and shrubs: effectiveness of surface sterilization methods. Mycological Research 97, 1447–1450.

    Article  Google Scholar 

  • Shimizu, M. 2000 Studies on endophytic actinomycetes (3). Disease resistance of tissue-cultured seedlings of rhododendron treated with Streptomyces sp. R-5. The 11th Asia Conference on Plant Pathology (ACPP 2000), August 25–28, Beijing, China.

  • Shimizu, M., Furumai, T., Igarashi, Y., Onaka, H., Tomio, N., Yoshida, R. & Kunoh, H. 2001 Association of induced disease resistance of rhododendron seedings with Inoculation of Streptomyces Sp. R-5 and treatment with actinomycete D and amphotericin B to the tissue-culture medium. The Journal of Antibiotics 54, 501–505.

    CAS  Google Scholar 

  • Song, Z.H., Ding, L.X., Ma, B.J. & Li, W.Z. 1999 Studies on the population and dynamic analysis of peanut endophytes. Acta Phytophylacica Sinica 26, 309–314.

    Google Scholar 

  • Suman, A., Shasany, A.K., Singh, M., Shahi, H.N., Gaur, A. & Khanuja, S.P.S. 2001 Molecular assessment of diversity among endophytic diazotrophs isolated from subtropical Indian sugarcane. World Journal of Microbiology and Biotechnology 17, 39–45.

    Article  CAS  Google Scholar 

  • Trejo-Estrada, S.R., Sepulveda, I.R. & Crawford, D.L. 1998 In vitro and in vivo antagonism of Streptomyces violaceusniger YCED9 against fungal pathogens of turfgrass. World Journal of Microbiology and Biotechnology 14, 865–872.

    Article  Google Scholar 

  • Verma, S.C., Ladha, J.K. & Tripathi, A.K. 2001 Evaluation of plant growth promoting and colonization ability of endophytic diazotrophs from deep water rice. Journal of Biotechnology 91, 127–141.

    Article  CAS  Google Scholar 

  • Wei, J.C. 1979 Manual of Determinative Fungi. pp. 5–201. Shanghai: Shanghai Scientific & Technical Publishers. ISBN 13119.718 (P.R. China).

    Google Scholar 

  • Yan, X.C. 1992 Classification and Identification of Actinomycetes. pp. 623–656. Beijing: Bios Scientific Publishers Limited. ISBN 7-03-002022-7.

    Google Scholar 

  • Zheng, Z.H., Zeng, W., Huang, Y.J., Yang, Z.Y., Li, J., Cai, H.R. & Su, W.J. 2000 Detection of antitumor and antimicrobial activities in marine organism associated actinomycetes isolated from the Taiwan Strait, China. FEMS Microbiology Letters 188, 87–91.

    Article  CAS  Google Scholar 

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Tian, X., Cao, L., Tan, H. et al. Study on the communities of endophytic fungi and endophytic actinomycetes from rice and their antipathogenic activities in vitro . World Journal of Microbiology and Biotechnology 20, 303–309 (2004). https://doi.org/10.1023/B:WIBI.0000023843.83692.3f

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  • DOI: https://doi.org/10.1023/B:WIBI.0000023843.83692.3f

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