--- versions: release: version_number: "3.10" # change this at release time r_url: "https://cran.rstudio.com/src/base/R-latest.tar.gz" parent: "rocker/rstudio:3.6.2" use_r_devel: false # should always be false devel: version_number: "3.11" # change this at release time ## IMPORTANT: Change r_url at release time if new bioc devel does(not) use R-devel #parent: "rocker/rstudio:3.6.1" parent: "rocker/rstudio:devel" # currently known bug/issue in rocker/rstudio-daily #"rocker/rstudio-daily" # should be rocker/rstudio-daily if # use_r_devel is true, otherwise # rocker/rstudio use_r_devel: false # true half the year # The following variable (use_numbered_branch) is only relevant if # use_r_devel is true. # use_numbered_branch should be false OR should be the (quoted) version number from # which to pull R. Set to false if you want to use the default R installed # by rocker, which pulls from trunk. Or set to a number (i.e. 3.2) to # install R from that branch. This is appropriate when R-devel becomes R-alpha. # For example, around March 19th, 2015, an R-3-2-branch was created and # the R in trunk became R-3.3. However, the contemporaneous Bioconductor # devel branch uses R-3.2, NOT 3.3, so we would set the below variable # to "3.2" (be sure to quote the value so it's forced to be a string). use_numbered_branch: false containers: # FIXME (?) rename this to 'images' (?) base: parent: bogus core: parent: bioconductor/base mscore: parent: bioconductor/base protmetcore: parent: bioconductor/mscore biocViews: - Metabolomics - Proteomics metabolomics: parent: bioconductor/protmetcore biocViews: - Metabolomics protcore: parent: bioconductor/protmetcore proteomics: parent: bioconductor/protcore biocViews: - Proteomics - MassSpectrometryData cytometry: parent: bioconductor/base biocViews: - FlowCytometry