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Some rows contain ''None" labels. #3

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dongheechoi opened this issue May 15, 2024 · 1 comment
Open

Some rows contain ''None" labels. #3

dongheechoi opened this issue May 15, 2024 · 1 comment

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@dongheechoi
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When I run bash scripts/build_biorex_datasets.sh, the error occurs.

BioREx/src/run_ncbi_rel_exp.py

Line 112 in 0031c52

label = label2id[ex[self.label_name]]

Here, the code emits an error, because it cannot find a label when the label is ''.

I think the

BioREx/src/run_ncbi_rel_exp.py

Line 148 in 0031c52

data_df = pd.read_csv(data_file, sep='\t', dtype=str).fillna(np.str_(''))
should be changed.
The None label is changed into "'' for this code.
@dongheechoi dongheechoi mentioned this issue May 15, 2024
Merged
@ptlai
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ptlai commented May 22, 2024

Thank you very much for reporting the error. I have merged your request.

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@dongheechoi @ptlai
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