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sentences.c
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sentences.c
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#include "M_terms.h"
#include "newMain.h"
#include "ageLookFor.h"
#include "sents.h"
#include "PTs.h"
#define TRUE 1
#define FALSE 0
extern int veterinaryJournal;
extern int RTM_Debug;
extern int haveFullText;
extern long fullTextStartPos;
extern long TIStartPos;
extern long ABStartPos;
extern long cit_len;
extern char *citation;
extern char *origCitation;
extern long gTLen;
extern char *globalTitle;
extern long gALen;
extern char *globalAbstract;
extern FILE *fout;
extern char muid[SMALL_LINE + 1];
extern char nlmID[SMALL_LINE + 1];
extern struct sentStruct sentList[MAX_SENTs];
extern long numSents;
extern void process_mterm(int ambigFlag, char *ambigTrigger, char *mterm, int this_path,
float weight, int type, char *textloc, char *entry_term,
char *trigger, char *this_dui, char *origPMID,
char *positionalInfo, int forcePrint);
extern void addPT(char *DUI, char *loc, char *lookFor, char *MHname,
char *globalET, char *globalPI, int flag, int isSpecial);
extern int foundInText(char *lookFor, int caseSensitive, int TitleOnly);
struct sentStruct sentXList[MAX_SENTs];
long numXSents = 0;
void splitCitation();
void checkSentPTs();
int foundInSent(char *haystack, char *needle);
void createLocalXSents();
void checkPT_SentNegation();
void findXSent(char *haystack, char *needle);
void expandNegPTLookFor(char *lookFor);
void checkSentMHs();
void checkSentCTs();
char *checkSentMaleFemalePct(int foundMale, int foundFemale);
void findXBeginSent(char *haystack, char *needle);
long globalPos = 0;
/***************************************************************************
*
* splitCitation --
*
* Split Title & Abstract into separate sentences for Age & PT lookups.
* Breaks: period, question mark, exclamation mark (removed colon 2/11/2021)
* Added Colon back in 3/1/2021.
*
***************************************************************************/
void splitCitation()
{
int endSent;
long i, pos, runningPos, endPos;
char tmp[PMAXLINE + 1];
if(RTM_Debug)
{
fprintf(fout, "Entered splitCitation\n");
fflush(fout);
/*
fprintf(fout, "gTLen: %ld\n", gTLen); fflush(fout);
fprintf(fout, "Title: #%s#\n", globalTitle); fflush(fout);
fprintf(fout, "gALen: %ld\n", gALen); fflush(fout);
fprintf(fout, "Abstract: #%s#\n", globalAbstract); fflush(fout);
*/
} /* fi */
/* Handle Title first - should already be in lowercase */
endSent = FALSE;
pos = runningPos = 0;
strcpy(tmp, "");
endPos = gTLen;
for(i = 0; i < endPos; i++)
{
if((globalTitle[i] == ' ') && (pos == 0))
{
tmp[pos] = globalTitle[i];
runningPos++;
} /* fi */
else
tmp[pos++] = globalTitle[i];
/* COLON is debatable - I've taken out for now March 30, 2021
if((globalTitle[i] == '.') || (globalTitle[i] == '!') || (globalTitle[i] == '?') ||
(globalTitle[i] == ':'))
*/
if((globalTitle[i] == '.') || (globalTitle[i] == '!') || (globalTitle[i] == '?'))
{
endSent = TRUE;
/* Check to see if we have a digit after the period. If so, not end of sentence */
if((globalTitle[i] == '.') && (i < (endPos - 1)))
{
if(isdigit(globalTitle[i + 1]))
endSent = FALSE;
} /* fi */
if(endSent)
{
tmp[pos] = '\0';
if(numSents < MAX_SENTs)
{
sentList[numSents].locPos = runningPos;
/* NOTE: +6 for "TI - " */
sentList[numSents].citPos = TIStartPos + runningPos + 6;
sentList[numSents].sentLen = pos;
sentList[numSents].sentence = strdup(tmp);
strcpy(sentList[numSents].loc, "TI");
numSents++;
runningPos = (i + 1);
} /* fi */
else
{
fprintf(stderr, "Skipping TI Sentence - too many: #%s#\n", tmp);
fflush(stderr);
} /* else */
strcpy(tmp, "");
pos = 0;
} /* fi endSent */
} /* fi sentence break char. */
} /* for each TI character */
/* Check to see if we have anything left for a sentence */
if(pos > 0)
{
tmp[pos] = '\0';
if(numSents < MAX_SENTs)
{
sentList[numSents].locPos = runningPos;
/* NOTE: +6 for "TI - " */
sentList[numSents].citPos = TIStartPos + runningPos + 6;
sentList[numSents].sentLen = pos;
sentList[numSents].sentence = strdup(tmp);
strcpy(sentList[numSents].loc, "TI");
numSents++;
} /* fi */
else
{
fprintf(stderr, "Skipping TI Sentence - too many: #%s#\n", tmp);
fflush(stderr);
} /* else */
} /* fi pos > 0 */
if(RTM_Debug)
{
fprintf(fout, "Number of Sentences after TI: %ld\n", numSents);
fflush(fout);
} /* fi */
/* Handle Abstract Next - should already be in lowercase */
endSent = FALSE;
pos = runningPos = 0;
strcpy(tmp, "");
endPos = gALen;
if(haveFullText) /* Want to limit sentences to regular Abstract text & not Full Text */
endPos = (fullTextStartPos - ABStartPos - 6);
for(i = 0; i < endPos; i++)
{
if((globalAbstract[i] == ' ') && (pos == 0))
{
tmp[pos] = globalAbstract[i];
runningPos++;
} /* fi */
else
tmp[pos++] = globalAbstract[i];
/* COLON is debatable - I've taken out for now March 30, 2021
if((globalAbstract[i] == '.') || (globalAbstract[i] == '!') ||
(globalAbstract[i] == '?') ||(globalAbstract[i] == ':'))
*/
if((globalAbstract[i] == '.') || (globalAbstract[i] == '!') ||
(globalAbstract[i] == '?'))
{
endSent = TRUE;
/* Check to see if we have a digit after the period. If so, not end of sentence */
if((globalAbstract[i] == '.') && (i < (endPos - 1)))
{
if(isdigit(globalAbstract[i + 1]))
endSent = FALSE;
} /* fi */
if(endSent)
{
tmp[pos] = '\0';
if(numSents < MAX_SENTs)
{
sentList[numSents].locPos = runningPos;
/* NOTE: +6 for "AB - " */
sentList[numSents].citPos = ABStartPos + runningPos + 6;
sentList[numSents].sentLen = pos;
sentList[numSents].sentence = strdup(tmp);
strcpy(sentList[numSents].loc, "AB");
numSents++;
runningPos = (i + 1);
} /* fi */
else
{
fprintf(stderr, "Skipping AB Sentence - too many: #%s#\n", tmp);
fflush(stderr);
} /* else */
strcpy(tmp, "");
pos = 0;
} /* fi endSent */
} /* fi sentence break char. */
} /* for each AB character */
/* Check to see if we have anything left for a sentence */
if(pos > 0)
{
tmp[pos] = '\0';
if(numSents < MAX_SENTs)
{
sentList[numSents].locPos = runningPos;
/* NOTE: +6 for "AB - " */
sentList[numSents].citPos = ABStartPos + runningPos + 6;
sentList[numSents].sentLen = pos;
sentList[numSents].sentence = strdup(tmp);
strcpy(sentList[numSents].loc, "AB");
numSents++;
} /* fi */
else
{
fprintf(stderr, "Skipping AB Sentence - too many: #%s#\n", tmp);
fflush(stderr);
} /* else */
} /* fi pos > 0 */
if(RTM_Debug)
{
fprintf(fout, "Number of Sentences after AB: %ld\n", numSents);
fflush(fout);
} /* fi */
} /* splitCitation */
/***************************************************************************
*
* checkSentPTs --
*
*
*
***************************************************************************/
void checkSentPTs()
{
int done, q, x, y, z, foundReqElem, found;
long begPos, endPos, endCheck, i, j, p, r, sentLen, pos, citPos, lastSentToCheck;
char tmp[MAXLINE + 1], globalET[MAXLINE + 1], globalPI[MAXLINE + 1],
loc[5], locLC[5], PTname[250], PTui[25];
createLocalXSents();
checkPT_SentNegation();
/* NOTE: July 29, 2021 - ignoring last sentence in the abstract since it normally talks
about future actions.
*/
if(gALen > 0) /* We have an abstract */
lastSentToCheck = numSents - 1;
else
lastSentToCheck = numSents;
if(RTM_Debug)
{
for(i = 0; i < lastSentToCheck; i++)
fprintf(fout, "Sentence[%ld]: #%s#\n", i, sentXList[i].sentence);
} /* fi */
for(j = 0; j < numLookPTs; j++)
{
begPos = endPos = -1;
done = FALSE;
strcpy(globalET, "[");
strcpy(globalPI, "");
if(RTM_Debug)
{
fprintf(fout, "\nStarting LookForPTs[%ld]\n", j);
fflush(fout);
} /* fi */
for(i = 0; i < lastSentToCheck; i++)
{
if(strstr(lookForPTs[j].loc, sentList[i].loc) != NULL)
{
foundReqElem = 0;
for(x = 0; x < lookForPTs[j].numReq; x++)
{
found = FALSE;
for(y = 0; !found && (y < lookForPTs[j].reqElements[x].numPhrases); y++)
{
if(lookForPTs[j].reqElements[x].doPrefix ||
lookForPTs[j].reqElements[x].doPostfix)
{
for(q = 0; !found && (q < numPP); q++)
{
if(lookForPTs[j].reqElements[x].doPrefix)
sprintf(tmp, "%s %s\0", prePost[q],
lookForPTs[j].reqElements[x].phrases[y]);
else
sprintf(tmp, "%s %s\0",
lookForPTs[j].reqElements[x].phrases[y], prePost[q]);
if(lookForPTs[j].negFlag)
found = foundInSent(sentXList[i].sentence, tmp);
else
found = foundInSent(sentList[i].sentence, tmp);
if(RTM_Debug)
{
fprintf(fout, "%d|CheckingI #%s# Sentence: %ld\n",
found, tmp, i);
fflush(fout);
} /* fi */
if(found)
{
foundReqElem++;
lookForPTs[j].reqElements[x].found = y;
lookForPTs[j].reqElements[x].phrasePos = globalPos;
lookForPTs[j].reqElements[x].ppVariant = q;
} /* fi */
} /* for q each numPP */
} /* fi */
else
{
if(lookForPTs[j].negFlag)
found = foundInSent(sentXList[i].sentence,
lookForPTs[j].reqElements[x].phrases[y]);
else
found = foundInSent(sentList[i].sentence,
lookForPTs[j].reqElements[x].phrases[y]);
if(RTM_Debug)
{
fprintf(fout, "%d|CheckingE #%s# in Sentence: %ld\n", found,
lookForPTs[j].reqElements[x].phrases[y], i);
fflush(fout);
} /* fi */
if(found)
{
foundReqElem++;
lookForPTs[j].reqElements[x].found = y;
lookForPTs[j].reqElements[x].phrasePos = globalPos;
} /* fi */
} /* else */
} /* for each phrase */
} /* for each reqElement */
/* See if we found everything required for this item - if we have
and the PT is Controlled Clinical Trial, check to see if "a scoping review"
is in the title or not and then stop the add here if it is.
*/
if((foundReqElem == lookForPTs[j].numReq) &&
(strcmp(lookForPTs[j].ptList[0].UI, "D018848") == 0))
{
if(foundInText("a scoping review", FALSE, TRUE))
{
foundReqElem = 0;
if(RTM_Debug)
{
fprintf(fout,
"Sentences: Found Controlled Clinical Trial - ignoring scoping review\n");
fflush(fout);
} /* fi */
} /* fi */
} /* fi */
/* See if we found everything required for this item */
if(foundReqElem == lookForPTs[j].numReq)
{
lookForPTs[j].numFound = foundReqElem;
done = TRUE;
sentLen = sentList[i].sentLen;
begPos = sentLen;
endPos = 0;
strcat(globalET, "]");
if(strlen(globalPI) > 0)
strcat(globalPI, ";");
if(RTM_Debug)
{
fprintf(fout, "\nFound All Required Elements: Sentence [%s]: %ld: #%s#\n",
sentList[i].loc, i, sentList[i].sentence);
fprintf(fout, " Elements Found: ");
} /* fi */
for(x = 0; x < lookForPTs[j].numReq; x++)
{
pos = lookForPTs[j].reqElements[x].found;
if(pos > -1)
{
if((lookForPTs[j].reqElements[x].doPrefix ||
lookForPTs[j].reqElements[x].doPostfix) &&
(lookForPTs[j].reqElements[x].ppVariant > -1))
{
endCheck = lookForPTs[j].reqElements[x].phrasePos + 1 +
(long)strlen(lookForPTs[j].reqElements[x].phrases[pos]) +
(long)strlen(prePost[lookForPTs[j].reqElements[x].ppVariant]);
} /* fi */
else
{
endCheck = lookForPTs[j].reqElements[x].phrasePos +
(long)strlen(lookForPTs[j].reqElements[x].phrases[pos]);
} /* else */
if(lookForPTs[j].reqElements[x].phrasePos < begPos)
begPos = lookForPTs[j].reqElements[x].phrasePos;
if(endCheck > endPos)
endPos = endCheck;
if(RTM_Debug)
{
if(x > 0)
fprintf(fout, "|");
if(lookForPTs[j].reqElements[x].doPrefix &&
(lookForPTs[j].reqElements[x].ppVariant > -1))
fprintf(fout, "%s ",
prePost[lookForPTs[j].reqElements[x].ppVariant]);
fprintf(fout, "%s", lookForPTs[j].reqElements[x].phrases[pos]);
if(lookForPTs[j].reqElements[x].doPostfix &&
(lookForPTs[j].reqElements[x].ppVariant > -1))
fprintf(fout, " %s",
prePost[lookForPTs[j].reqElements[x].ppVariant]);
fprintf(fout, " (%ld)", lookForPTs[j].reqElements[x].phrasePos);
} /* fi */
} /* fi pos > -1 */
} /* for */
if(RTM_Debug)
{
fprintf(fout, "\n");
fflush(fout);
if((begPos > -1) && (endPos < sentLen))
{
fprintf(fout, "Full Phrase [%ld-%ld]: ", begPos, endPos);
fflush(stdout);
for(x = begPos; x < endPos; x++)
fprintf(fout, "%c", sentList[i].sentence[x]);
fprintf(fout, "\n"); fflush(stdout);
} /* fi */
} /* fi RTM_Debug */
citPos = sentList[i].citPos;
p = 0;
strcpy(tmp, "");
for(x = begPos; x < endPos; x++)
tmp[p++] = origCitation[x + citPos];
tmp[p] = '\0';
if(RTM_Debug)
{
fprintf(fout, "Full Phrase from Citation [%ld|%ld|%ld-%ld]: %s\n", citPos,
sentList[i].locPos, begPos, endPos, tmp);
fflush(fout);
} /* fi */
strcpy(loc, "");
strcpy(locLC, "");
if(sentList[i].loc[0] == 'T')
{
strcpy(loc, "TI");
strcpy(locLC, "ti");
} /* fi */
else
{
strcpy(loc, "AB");
strcpy(locLC, "ab");
} /* else */
sprintf(globalPI, "%ld^%ld^0;\0", citPos + begPos, endPos - begPos);
for(z = 0; z < lookForPTs[j].numPTs; z++)
{
if(veterinaryJournal &&
(strcmp(lookForPTs[j].ptList[z].UI, "D016449") == 0))
{
strcpy(PTname, "Randomized Controlled Trial, Veterinary");
strcpy(PTui, "D000081262");
} /* fi */
else
{
strcpy(PTname, lookForPTs[j].ptList[z].PT);
strcpy(PTui, lookForPTs[j].ptList[z].UI);
} /* else */
sprintf(globalET, "[\"%s\"-%s-0-\"%s\"]\0", PTname, locLC, tmp);
addPT(PTui, loc, tmp, PTname, globalET, globalPI, TRUE, FALSE);
if(RTM_Debug)
{
fprintf(fout, "Adding PT: #%s:%s#\n", PTname, PTui);
fprintf(fout, "Sent globalPI: #%s# globalET: #%s#\n",
globalPI, globalET);
fflush(fout);
} /* fi */
} /* for */
} /* fi found everything */
/* Reset for next round */
lookForPTs[j].reqElements[x].found = -1;
lookForPTs[j].reqElements[x].phrasePos = -1;
lookForPTs[j].reqElements[x].ppVariant = -1;
} /* fi right location (TIAB <-> TI) */
} /* for each sentence */
} /* for each PT Rule */
/* Free up local copy of sentences for next round */
for(r = 0; r < numXSents; r++)
{
free(sentXList[r].sentence);
strcpy(sentXList[r].loc, "");
} /* for */
numXSents = 0;
} /* checkSentPTs */
/***************************************************************************
*
* foundInSent --
*
* This
*
***************************************************************************/
int foundInSent(char *haystack, char *needle)
{
int rtn = FALSE;
char *base, *foo;
int okLeft, okRight;
long i, j, baseLen, lfLen, diff, rPos, pos, x;
globalPos = -1;
okLeft = okRight = FALSE;
base = strdup(haystack);
baseLen = (long)strlen(haystack);
lfLen = (long)strlen(needle);
foo = strstr(base, needle);
while(!rtn && (foo != NULL))
{
okLeft = okRight = FALSE;
diff = foo - base;
if(diff == 0)
okLeft = TRUE;
else if(diff > 0)
{
if(isspace(base[diff - 1]) || ispunct(base[diff - 1]))
okLeft = TRUE;
} /* else fi */
if(okLeft)
{
pos = diff + lfLen;
if((pos >= baseLen) || isspace(base[pos]) || ispunct(base[pos]))
okRight = TRUE;
} /* fi okLeft */
if(okLeft && okRight)
{
rtn = TRUE;
globalPos = diff;
} /* fi */
for(j = 0; j < lfLen; j++)
base[j + diff] = 'X';
foo = strstr(base, needle);
} /* while foo */
free(base);
return(rtn);
} /* foundInSent */
/***************************************************************************
*
* createLocalXSents --
*
*
*
***************************************************************************/
void createLocalXSents()
{
long i;
numXSents = 0;
for(i = 0; i < numSents; i++)
{
sentXList[i].locPos = sentList[i].locPos;
sentXList[i].citPos = sentList[i].citPos;
sentXList[i].sentLen = sentList[i].sentLen;
sentXList[i].sentence = strdup(sentList[i].sentence);
strcpy(sentXList[i].loc, sentList[i].loc);
numXSents++;
} /* for */
} /* createLocalXSents */
/***************************************************************************
*
* checkPT_Negation --
*
*
*
***************************************************************************/
void checkPT_SentNegation()
{
int x, y, q;
long i, j;
char tmp[MAXLINE + 1];
/* Go through ignore list first */
for(i = 0; i < numSents; i++)
{
for(j = 0; j < numIgnore; j++)
{
findXSent(sentList[i].sentence, IgnoreList[j]);
findXSent(sentXList[i].sentence, IgnoreList[j]);
} /* for */
} /* for each Sentence */
if(RTM_Debug)
fprintf(fout, "numLookPTs: %ld\n", numLookPTs);
for(j = 0; j < numLookPTs; j++)
{
if(RTM_Debug)
fprintf(fout, "\nLook[%ld]\n", j);
for(x = 0; x < lookForPTs[j].numReq; x++)
{
if(RTM_Debug)
fprintf(fout, " Reqmnt[%d] numPhrases: %d\n", x,
lookForPTs[j].reqElements[x].numPhrases);
for(y = 0; y < lookForPTs[j].reqElements[x].numPhrases; y++)
{
if(lookForPTs[j].reqElements[x].doPrefix ||
lookForPTs[j].reqElements[x].doPostfix)
{
for(q = 0; q < numPP; q++)
{
if(lookForPTs[j].reqElements[x].doPrefix)
sprintf(tmp, "%s %s\0", prePost[q],
lookForPTs[j].reqElements[x].phrases[y]);
else
sprintf(tmp, "%s %s\0",
lookForPTs[j].reqElements[x].phrases[y], prePost[q]);
if(RTM_Debug)
fprintf(fout, " lookFor[y:%d q:%d]: #%s#\n", y, q, tmp);
if(strlen(tmp) > 4)
expandNegPTLookFor(tmp);
} /* for q each numPP */
} /* fi */
else
{
if(RTM_Debug)
fprintf(fout, " lookFor[%d]: #%s#\n", y,
lookForPTs[j].reqElements[x].phrases[y]);
if(strlen(lookForPTs[j].reqElements[x].phrases[y]) > 4)
expandNegPTLookFor(lookForPTs[j].reqElements[x].phrases[y]);
} /* else */
} /* for each phrase */
} /* for each reqElement */
} /* for each PT Rule */
} /* checkPT_SentNegation */
/***************************************************************************
*
* expandNegPTLookFor --
*
* This
*
***************************************************************************/
void expandNegPTLookFor(char *lookFor)
{
long i, j;
char tmp[SMALL_LINE + 1];
for(j = 0; j < numSents; j++)
{
for(i = 0; i < numPrefix_PTNegs; i++)
{
sprintf(tmp, "%s%s\0", lookFor, PT_NegPrefix[i]);
findXSent(sentXList[j].sentence, tmp);
} /* for Prefix */
for(i = 0; i < numPostfix_PTNegs; i++)
{
sprintf(tmp, "%s%s\0", PT_NegPostfix[i], lookFor);
findXSent(sentXList[j].sentence, tmp);
} /* for Postfix */
/* Misc. */
sprintf(tmp, "\"%s\"\0", lookFor);
findXSent(sentXList[j].sentence, tmp);
sprintf(tmp, "'%s'\0", lookFor);
findXSent(sentXList[j].sentence, tmp);
sprintf(tmp, "makes %s inappropriate\0", lookFor);
findXSent(sentXList[j].sentence, tmp);
} /* for each sentence */
} /* expandNegPTLookFor */
/***************************************************************************
*
* findXSent --
*
* This
*
***************************************************************************/
void findXSent(char *haystack, char *needle)
{
int rtn = FALSE;
char *base, *foo;
int okLeft, okRight;
long i, j, baseLen, lfLen, diff, rPos, pos, x;
globalPos = -1;
okLeft = okRight = FALSE;
base = strdup(haystack);
baseLen = (long)strlen(haystack);
lfLen = (long)strlen(needle);
foo = strstr(base, needle);
while(foo != NULL)
{
okLeft = okRight = FALSE;
diff = foo - base;
if(diff == 0)
okLeft = TRUE;
else if(diff > 0)
{
if(isspace(base[diff - 1]) || ispunct(base[diff - 1]))
okLeft = TRUE;
} /* else fi */
if(okLeft)
{
pos = diff + lfLen;
if((pos >= baseLen) || isspace(base[pos]) || ispunct(base[pos]))
okRight = TRUE;
} /* fi okLeft */
if(okLeft && okRight)
{
rtn = TRUE;
globalPos = diff;
} /* fi */
for(j = 0; j < lfLen; j++)
{
base[j + diff] = 'x';
haystack[j + diff] = 'x';
} /* for */
foo = strstr(base, needle);
} /* while foo */
free(base);
} /* findXSent */
/***************************************************************************
*
* checkSentMHs --
*
*
*
***************************************************************************/
void checkSentMHs()
{
int done, q, x, y, z, foundReqElem, found;
long begPos, endPos, endCheck, i, j, p, r, sentLen, pos, citPos;
char tmp[MAXLINE + 1], globalET[MAXLINE + 1], globalPI[MAXLINE + 1],
loc[5], locLC[5], MHname[250], MHui[25], from[MAXLINE + 1];
createLocalXSents();
if(RTM_Debug)
{
for(i = 0; i < numSents; i++)
fprintf(fout, "Sentence[%ld]: #%s#\n", i, sentXList[i].sentence);
} /* fi */
for(j = 0; j < numLookMHs; j++)
{
begPos = endPos = -1;
done = FALSE;
strcpy(globalET, "[");
strcpy(globalPI, "");
for(i = 0; i < numSents; i++)
{
if(strstr(lookForMHs[j].loc, sentList[i].loc) != NULL)
{
foundReqElem = 0;
for(x = 0; x < lookForMHs[j].numReq; x++)
{
found = FALSE;
for(y = 0; !found && (y < lookForMHs[j].reqElements[x].numPhrases); y++)
{
if(lookForMHs[j].negFlag)
found = foundInSent(sentXList[i].sentence,
lookForMHs[j].reqElements[x].phrases[y]);
else
found = foundInSent(sentList[i].sentence,
lookForMHs[j].reqElements[x].phrases[y]);
if(RTM_Debug)
{
fprintf(fout, "MH: %d|Checking #%s# in Sentence: %ld\n", found,
lookForMHs[j].reqElements[x].phrases[y], i);
fflush(fout);
} /* fi */
if(found)
{
foundReqElem++;
lookForMHs[j].reqElements[x].found = y;
lookForMHs[j].reqElements[x].phrasePos = globalPos;
} /* fi */
} /* for each phrase */
} /* for each reqElement */
/* See if we found everything required for this item */
if(foundReqElem == lookForMHs[j].numReq)
{
lookForMHs[j].numFound = foundReqElem;
done = TRUE;
sentLen = sentList[i].sentLen;
begPos = sentLen;
endPos = 0;
strcat(globalET, "]");
if(strlen(globalPI) > 0)
strcat(globalPI, ";");
if(RTM_Debug)
{
fprintf(fout,
"\nFound All Required Elements (MH): Sentence [%s]: %ld: #%s#\n",
sentList[i].loc, i, sentList[i].sentence);
fprintf(fout, " Elements Found: ");
} /* fi */
for(x = 0; x < lookForMHs[j].numReq; x++)
{
pos = lookForMHs[j].reqElements[x].found;
if(pos > -1)
{
endCheck = lookForMHs[j].reqElements[x].phrasePos +
(long)strlen(lookForMHs[j].reqElements[x].phrases[pos]);
if(lookForMHs[j].reqElements[x].phrasePos < begPos)
begPos = lookForMHs[j].reqElements[x].phrasePos;
if(endCheck > endPos)
endPos = endCheck;
if(RTM_Debug)
{
if(x > 0)
fprintf(fout, "|");
fprintf(fout, "%s", lookForMHs[j].reqElements[x].phrases[pos]);
fprintf(fout, " (%ld)", lookForMHs[j].reqElements[x].phrasePos);
} /* fi */
} /* fi pos > -1 */
} /* for */
if(RTM_Debug)
{
fprintf(fout, "\n");
fflush(fout);
if((begPos > -1) && (endPos < sentLen))
{
fprintf(fout, "MH: Full Phrase [%ld-%ld]: ", begPos, endPos);
fflush(stdout);
for(x = begPos; x < endPos; x++)
fprintf(fout, "%c", sentList[i].sentence[x]);
fprintf(fout, "\n"); fflush(stdout);
} /* fi */
} /* fi RTM_Debug */
citPos = sentList[i].citPos;
p = 0;
strcpy(tmp, "");
for(x = begPos; x < endPos; x++)
tmp[p++] = origCitation[x + citPos];
tmp[p] = '\0';
if(RTM_Debug)
{
fprintf(fout,
"MH: Full Phrase from Citation [%ld|%ld|%ld-%ld]: %s\n", citPos,
sentList[i].locPos, begPos, endPos, tmp);
fflush(fout);
} /* fi */
strcpy(loc, "");
strcpy(locLC, "");
if(sentList[i].loc[0] == 'T')
{
strcpy(loc, "TI");
strcpy(locLC, "ti");
} /* fi */
else
{
strcpy(loc, "AB");
strcpy(locLC, "ab");
} /* else */
sprintf(globalPI, "%ld^%ld^0;\0", citPos + begPos, endPos - begPos);
for(z = 0; z < lookForMHs[j].numPTs; z++)
{
strcpy(MHname, lookForMHs[j].ptList[z].PT);
strcpy(MHui, lookForMHs[j].ptList[z].UI);