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Explain/Show general workflow for NCBI SRA Taxonomy Analysis Tool (STAT) #6

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ashishdamania opened this issue Jul 15, 2017 · 3 comments
Open

Explain/Show general workflow for NCBI SRA Taxonomy Analysis Tool (STAT) #6

ashishdamania opened this issue Jul 15, 2017 · 3 comments

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@ashishdamania
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ashishdamania commented Jul 15, 2017 •
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I was able to install this program.

However, It is hard to figure out which script/binary need to run first?
For example, do we need to download the list of taxonomy IDS in order to build an index?
What is tax.parents in the build_db_from_sequence_tree.sh?

It will be really helpful to add documentation about general flow of this program.

Thank you!
@ashishdamania ashishdamania changed the title Can you add an example on how to run the included example? Explain/Show general workflow for NCBI SRA Taxonomy Analysis Tool (STAT) Jul 15, 2017
@kwrodarmer
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This tool is not yet released.

@fjuradorueda
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Hello @deepthoughts

Did you figure out the workflow of the SRA Taxonomy Analysis Tool (STAT) ?
It is because I am having the very same difficulties trying to run it. Even with the "example" they provide.
Did you find any usage manual or similar?

Thanks you in advance.

@ashishdamania
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Hi @fjuradorueda
It has been awhile since I used it and have not checked back recently. I am using MASH for similar purpose. https://mash.readthedocs.io/en/latest/
I hope you find that program useful.
Thanks!

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@ashishdamania @kwrodarmer @fjuradorueda
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