Complete Genome Sequence of Sterol-Transforming Mycobacterium neoaurum Strain VKM Ac-1815D

doi:10.1128/genomeA.01177-13

. 2014 Jan 16;2(1):e01177-13.

doi: 10.1128/genomeA.01177-13.

Complete Genome Sequence of Sterol-Transforming Mycobacterium neoaurum Strain VKM Ac-1815D

Victoriya Y Shtratnikova¹, Eugeny Y Bragin, Dmitry V Dovbnya, Yury A Pekov, Mikhail I Schelkunov, Nicolai Strizhov, Tanya V Ivashina, Vasily V Ashapkin, Marina V Donova

Affiliations

PMID: 24435872
PMCID: PMC3894286
DOI: 10.1128/genomeA.01177-13

Complete Genome Sequence of Sterol-Transforming Mycobacterium neoaurum Strain VKM Ac-1815D

Victoriya Y Shtratnikova et al. Genome Announc. 2014.

. 2014 Jan 16;2(1):e01177-13.

doi: 10.1128/genomeA.01177-13.

Authors

Victoriya Y Shtratnikova¹, Eugeny Y Bragin, Dmitry V Dovbnya, Yury A Pekov, Mikhail I Schelkunov, Nicolai Strizhov, Tanya V Ivashina, Vasily V Ashapkin, Marina V Donova

Affiliation

¹ Center of Innovations and Technologies Biologically Active Compounds and Their Applications, Moscow, Russia.

PMID: 24435872
PMCID: PMC3894286
DOI: 10.1128/genomeA.01177-13

Abstract

Mycobacterium neoaurum strain VKM Ac-1815D produces 4-androstene-3,17-dione as a major compound from phytosterols. Here, we report the complete genome sequence of the strain. The genome consists of a single circular 5,438,190-bp chromosome, with a G+C content of 66.88%, containing 5,318 putative open reading frames (ORFs), 46 tRNAs, and 6 rRNAs. Arrays of cholesterol metabolism genes are randomly clustered throughout the chromosome.

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References

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1. Donova MV, Gulevskaya SA, Dovbnya DV, Puntus IF. 2005. Mycobacterium sp. mutant strain producing 9alpha-hydroxyandrostenedione from sitosterol. Appl. Microbiol. Biotechnol. 67:671–678. 10.1007/s00253-004-1808-y - DOI - PubMed
1. Bragin EY, Shtratnikova VY, Dovbnya DV, Schelkunov MI, Pekov YA, Egorova OV, Ivashina TV, Sokolov SL, Ashapkin VV, Donova MV. 2013. Comparative analysis of genes encoding key steroid core oxidation enzymes in fast-growing Mycobacterium spp. strains. J. Steroid Biochem. Mol. Biol. 138:41–53. 10.1016/j.jsbmb.2013.02.016 - DOI - PubMed
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[1] García JL, Uhía I, Galán B. 2012. Catabolism and biotechnological applications of cholesterol degrading bacteria. Microb. Biotechnol. 5:679–699. 10.1111/j.1751-7915.2012.00331.x - DOI - PMC - PubMed

[2] García JL, Uhía I, Galán B. 2012. Catabolism and biotechnological applications of cholesterol degrading bacteria. Microb. Biotechnol. 5:679–699. 10.1111/j.1751-7915.2012.00331.x - DOI - PMC - PubMed

[3] Donova MV, Egorova OV. 2012. Microbial steroid transformations: current state and prospects. Appl. Microbiol. Biotechnol. 94:1423–1447. 10.1007/s00253-012-4078-0 - DOI - PubMed

[4] Donova MV, Egorova OV. 2012. Microbial steroid transformations: current state and prospects. Appl. Microbiol. Biotechnol. 94:1423–1447. 10.1007/s00253-012-4078-0 - DOI - PubMed

[5] Donova MV, Gulevskaya SA, Dovbnya DV, Puntus IF. 2005. Mycobacterium sp. mutant strain producing 9alpha-hydroxyandrostenedione from sitosterol. Appl. Microbiol. Biotechnol. 67:671–678. 10.1007/s00253-004-1808-y - DOI - PubMed

[6] Donova MV, Gulevskaya SA, Dovbnya DV, Puntus IF. 2005. Mycobacterium sp. mutant strain producing 9alpha-hydroxyandrostenedione from sitosterol. Appl. Microbiol. Biotechnol. 67:671–678. 10.1007/s00253-004-1808-y - DOI - PubMed

[7] Bragin EY, Shtratnikova VY, Dovbnya DV, Schelkunov MI, Pekov YA, Egorova OV, Ivashina TV, Sokolov SL, Ashapkin VV, Donova MV. 2013. Comparative analysis of genes encoding key steroid core oxidation enzymes in fast-growing Mycobacterium spp. strains. J. Steroid Biochem. Mol. Biol. 138:41–53. 10.1016/j.jsbmb.2013.02.016 - DOI - PubMed

[8] Bragin EY, Shtratnikova VY, Dovbnya DV, Schelkunov MI, Pekov YA, Egorova OV, Ivashina TV, Sokolov SL, Ashapkin VV, Donova MV. 2013. Comparative analysis of genes encoding key steroid core oxidation enzymes in fast-growing Mycobacterium spp. strains. J. Steroid Biochem. Mol. Biol. 138:41–53. 10.1016/j.jsbmb.2013.02.016 - DOI - PubMed

[9] Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829. 10.1101/gr.074492.107 - DOI - PMC - PubMed

[10] Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829. 10.1101/gr.074492.107 - DOI - PMC - PubMed

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Complete Genome Sequence of Sterol-Transforming Mycobacterium neoaurum Strain VKM Ac-1815D

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Complete Genome Sequence of Sterol-Transforming Mycobacterium neoaurum Strain VKM Ac-1815D

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