Draft Genome Sequence of Cupriavidus sp. Strain SK-3, a 4-Chlorobiphenyl- and 4-Clorobenzoic Acid-Degrading Bacterium

doi:10.1128/genomeA.00664-14

. 2014 Jul 3;2(4):e00664-14.

doi: 10.1128/genomeA.00664-14.

Draft Genome Sequence of Cupriavidus sp. Strain SK-3, a 4-Chlorobiphenyl- and 4-Clorobenzoic Acid-Degrading Bacterium

Claudia Vilo¹, Michael J Benedik², Matthew Ilori, Qunfeng Dong³

Affiliations

¹ Department of Biological Sciences, University of North Texas, Denton, Texas, USA.
² Department of Biology, Texas A&M University, College Station, Texas, USA.
³ Qunfeng.Dong@unt.edu.

PMID: 24994805
PMCID: PMC4082005
DOI: 10.1128/genomeA.00664-14

Draft Genome Sequence of Cupriavidus sp. Strain SK-3, a 4-Chlorobiphenyl- and 4-Clorobenzoic Acid-Degrading Bacterium

Claudia Vilo et al. Genome Announc. 2014.

. 2014 Jul 3;2(4):e00664-14.

doi: 10.1128/genomeA.00664-14.

Authors

Claudia Vilo¹, Michael J Benedik², Matthew Ilori, Qunfeng Dong³

Affiliations

¹ Department of Biological Sciences, University of North Texas, Denton, Texas, USA.
² Department of Biology, Texas A&M University, College Station, Texas, USA.
³ Qunfeng.Dong@unt.edu.

PMID: 24994805
PMCID: PMC4082005
DOI: 10.1128/genomeA.00664-14

Erratum in

Erratum for Vilo et al., Draft Genome Sequence of Cupriavidus sp. Strain SK-3, a 4-Chlorobiphenyl- and 4-Chlorobenzoic Acid-Degrading Bacterium.
Vilo C, Benedik MJ, Ilori M, Dong Q. Vilo C, et al. Genome Announc. 2014 Jul 31;2(4):e00756-14. doi: 10.1128/genomeA.00756-14. Genome Announc. 2014. PMID: 25081266 Free PMC article. No abstract available.

Abstract

We report the draft genome sequence of Cupriavidus sp. strain SK-3, which can use 4-chlorobiphenyl and 4-clorobenzoic acid as the sole carbon source for growth. The draft genome sequence allowed the study of the polychlorinated biphenyl degradation mechanism and the recharacterization of the strain SK-3 as a Cupriavidus species.

PubMed Disclaimer

Cited by

A comparative evaluation of genome assembly reconciliation tools.
Alhakami H, Mirebrahim H, Lonardi S. Alhakami H, et al. Genome Biol. 2017 May 18;18(1):93. doi: 10.1186/s13059-017-1213-3. Genome Biol. 2017. PMID: 28521789 Free PMC article.

References

1. Kim S, Picardal F. 2001. Microbial growth on dichlorobiphenyls chlorinated on both rings as a sole carbon and energy source. Appl. Environ. Microbiol. 67:1953–1955. 10.1128/AEM.67.4.1953-1955.2001 - DOI - PMC - PubMed
1. Kim S, Picardal FW. 2000. A novel bacterium that utilizes monochlorobiphenyls and 4-chlorobenzoate as growth substrates. FEMS Microbiol. Lett. 185:225–229. 10.1111/j.1574-6968.2000.tb09066.x - DOI - PubMed
1. Field JA, Sierra-Alvarez R. 2008. Microbial transformation and degradation of polychlorinated biphenyls. Environ. Pollut. 155:1–12. 10.1016/j.envpol.2007.10.016 - DOI - PubMed
1. Soueidan H, Maurier F, Groppi A, Sirand-Pugnet P, Tardy F, Citti C, Dupuy V, Nikolski M. 2013. Finishing bacterial genome assemblies with Mix. BMC Bioinformatics 14(Suppl 15):S16. 10.1186/1471-2105-14-S15-S16 - DOI - PMC - PubMed
1. Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW, Wang J. 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18. 10.1186/2047-217X-1-18 - DOI - PMC - PubMed

LinkOut - more resources

Full Text Sources
Other Literature Sources
- scite Smart Citations
Molecular Biology Databases
- REBASE - The Restriction Enzyme Database

[1] Kim S, Picardal F. 2001. Microbial growth on dichlorobiphenyls chlorinated on both rings as a sole carbon and energy source. Appl. Environ. Microbiol. 67:1953–1955. 10.1128/AEM.67.4.1953-1955.2001 - DOI - PMC - PubMed

[2] Kim S, Picardal F. 2001. Microbial growth on dichlorobiphenyls chlorinated on both rings as a sole carbon and energy source. Appl. Environ. Microbiol. 67:1953–1955. 10.1128/AEM.67.4.1953-1955.2001 - DOI - PMC - PubMed

[3] Kim S, Picardal FW. 2000. A novel bacterium that utilizes monochlorobiphenyls and 4-chlorobenzoate as growth substrates. FEMS Microbiol. Lett. 185:225–229. 10.1111/j.1574-6968.2000.tb09066.x - DOI - PubMed

[4] Kim S, Picardal FW. 2000. A novel bacterium that utilizes monochlorobiphenyls and 4-chlorobenzoate as growth substrates. FEMS Microbiol. Lett. 185:225–229. 10.1111/j.1574-6968.2000.tb09066.x - DOI - PubMed

[5] Field JA, Sierra-Alvarez R. 2008. Microbial transformation and degradation of polychlorinated biphenyls. Environ. Pollut. 155:1–12. 10.1016/j.envpol.2007.10.016 - DOI - PubMed

[6] Field JA, Sierra-Alvarez R. 2008. Microbial transformation and degradation of polychlorinated biphenyls. Environ. Pollut. 155:1–12. 10.1016/j.envpol.2007.10.016 - DOI - PubMed

[7] Soueidan H, Maurier F, Groppi A, Sirand-Pugnet P, Tardy F, Citti C, Dupuy V, Nikolski M. 2013. Finishing bacterial genome assemblies with Mix. BMC Bioinformatics 14(Suppl 15):S16. 10.1186/1471-2105-14-S15-S16 - DOI - PMC - PubMed

[8] Soueidan H, Maurier F, Groppi A, Sirand-Pugnet P, Tardy F, Citti C, Dupuy V, Nikolski M. 2013. Finishing bacterial genome assemblies with Mix. BMC Bioinformatics 14(Suppl 15):S16. 10.1186/1471-2105-14-S15-S16 - DOI - PMC - PubMed

[9] Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW, Wang J. 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18. 10.1186/2047-217X-1-18 - DOI - PMC - PubMed

[10] Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW, Wang J. 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18. 10.1186/2047-217X-1-18 - DOI - PMC - PubMed

Save citation to file

Email citation

Add to Collections

Add to My Bibliography

Your saved search

Create a file for external citation management software

Your RSS Feed

Draft Genome Sequence of Cupriavidus sp. Strain SK-3, a 4-Chlorobiphenyl- and 4-Clorobenzoic Acid-Degrading Bacterium

Affiliations

Draft Genome Sequence of Cupriavidus sp. Strain SK-3, a 4-Chlorobiphenyl- and 4-Clorobenzoic Acid-Degrading Bacterium

Authors

Affiliations

Erratum in

Abstract

Similar articles

Cited by

References

LinkOut - more resources

Full Text Sources

Other Literature Sources

Molecular Biology Databases

Erratum in

Abstract

Similar articles

Cited by

References

Related information

LinkOut - more resources

Full Text Sources

Other Literature Sources

Molecular Biology Databases