Diffusion pseudotime robustly reconstructs lineage branching
- PMID: 27571553
- DOI: 10.1038/nmeth.3971
Diffusion pseudotime robustly reconstructs lineage branching
Abstract
The temporal order of differentiating cells is intrinsically encoded in their single-cell expression profiles. We describe an efficient way to robustly estimate this order according to diffusion pseudotime (DPT), which measures transitions between cells using diffusion-like random walks. Our DPT software implementations make it possible to reconstruct the developmental progression of cells and identify transient or metastable states, branching decisions and differentiation endpoints.
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