Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5

doi:10.1128/MRA.00935-18

. 2018 Aug 30;7(8):e00935-18.

doi: 10.1128/MRA.00935-18. eCollection 2018 Aug.

Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5

Felipe Vejarano¹, Chiho Suzuki-Minakuchi^{1

2}, Yoshiyuki Ohtsubo³, Masataka Tsuda³, Kazunori Okada¹, Hideaki Nojiri^{1

2}

Affiliations

¹ Biotechnology Research Center, The University of Tokyo, Tokyo, Japan.
² Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo, Japan.
³ Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

PMID: 30533913
PMCID: PMC6256505
DOI: 10.1128/MRA.00935-18

Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5

Felipe Vejarano et al. Microbiol Resour Announc. 2018.

. 2018 Aug 30;7(8):e00935-18.

doi: 10.1128/MRA.00935-18. eCollection 2018 Aug.

Authors

Felipe Vejarano¹, Chiho Suzuki-Minakuchi^{1

2}, Yoshiyuki Ohtsubo³, Masataka Tsuda³, Kazunori Okada¹, Hideaki Nojiri^{1

2}

Affiliations

¹ Biotechnology Research Center, The University of Tokyo, Tokyo, Japan.
² Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo, Japan.
³ Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

PMID: 30533913
PMCID: PMC6256505
DOI: 10.1128/MRA.00935-18

Abstract

We determined the complete genome sequence of Erythrobacter sp. strain KY5, a bacterium isolated from Tokyo Bay and capable of degrading carbazole. The genome consists of a 3.3-Mb circular chromosome that carries the gene clusters involved in carbazole degradation and biosynthesis of the photosynthetic apparatus of aerobic anoxygenic phototrophic bacteria.

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References

1. Benedik MJ, Gibbs PR, Riddle RR, Willson RC. 1998. Microbial denitrogenation of fossil fuels. Trends Biotechnol 16:390–395. doi:10.1016/S0167-7799(98)01237-2. - DOI - PubMed
1. Tsuda H, Hagiwara A, Shibata M, Ohshima M, Ito N. 1982. Carcinogenic effect of carbazole in the liver of (C57BL/6N x C3H/HeN)F1 mice. J Natl Cancer Inst 69:1383–1389. - PubMed
1. Jha AM, Singh AC, Bharti MK. 2002. Clastogenicity of carbazole in mouse bone marrow cells in vivo. Mutat Res 521:11–17. doi:10.1016/S1383-5718(02)00210-3. - DOI - PubMed
1. Inoue K, Widada J, Nakai S, Endoh T, Urata M, Ashikawa Y, Shintani M, Saiki Y, Yoshida T, Habe H, Omori T, Nojiri H. 2004. Divergent structures of carbazole degradative car operons isolated from Gram-negative bacteria. Biosci Biotechnol Biochem 68:1467–1480. doi:10.1271/bbb.68.1467. - DOI - PubMed
1. Maeda R, Nagashima H, Widada J, Iwata K, Omori T. 2009. Novel marine carbazole-degrading bacteria. FEMS Microbiol Lett 292:203–209. doi:10.1111/j.1574-6968.2009.01497.x. - DOI - PubMed

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[1] Benedik MJ, Gibbs PR, Riddle RR, Willson RC. 1998. Microbial denitrogenation of fossil fuels. Trends Biotechnol 16:390–395. doi:10.1016/S0167-7799(98)01237-2. - DOI - PubMed

[2] Benedik MJ, Gibbs PR, Riddle RR, Willson RC. 1998. Microbial denitrogenation of fossil fuels. Trends Biotechnol 16:390–395. doi:10.1016/S0167-7799(98)01237-2. - DOI - PubMed

[3] Tsuda H, Hagiwara A, Shibata M, Ohshima M, Ito N. 1982. Carcinogenic effect of carbazole in the liver of (C57BL/6N x C3H/HeN)F1 mice. J Natl Cancer Inst 69:1383–1389. - PubMed

[4] Tsuda H, Hagiwara A, Shibata M, Ohshima M, Ito N. 1982. Carcinogenic effect of carbazole in the liver of (C57BL/6N x C3H/HeN)F1 mice. J Natl Cancer Inst 69:1383–1389. - PubMed

[5] Jha AM, Singh AC, Bharti MK. 2002. Clastogenicity of carbazole in mouse bone marrow cells in vivo. Mutat Res 521:11–17. doi:10.1016/S1383-5718(02)00210-3. - DOI - PubMed

[6] Jha AM, Singh AC, Bharti MK. 2002. Clastogenicity of carbazole in mouse bone marrow cells in vivo. Mutat Res 521:11–17. doi:10.1016/S1383-5718(02)00210-3. - DOI - PubMed

[7] Inoue K, Widada J, Nakai S, Endoh T, Urata M, Ashikawa Y, Shintani M, Saiki Y, Yoshida T, Habe H, Omori T, Nojiri H. 2004. Divergent structures of carbazole degradative car operons isolated from Gram-negative bacteria. Biosci Biotechnol Biochem 68:1467–1480. doi:10.1271/bbb.68.1467. - DOI - PubMed

[8] Inoue K, Widada J, Nakai S, Endoh T, Urata M, Ashikawa Y, Shintani M, Saiki Y, Yoshida T, Habe H, Omori T, Nojiri H. 2004. Divergent structures of carbazole degradative car operons isolated from Gram-negative bacteria. Biosci Biotechnol Biochem 68:1467–1480. doi:10.1271/bbb.68.1467. - DOI - PubMed

[9] Maeda R, Nagashima H, Widada J, Iwata K, Omori T. 2009. Novel marine carbazole-degrading bacteria. FEMS Microbiol Lett 292:203–209. doi:10.1111/j.1574-6968.2009.01497.x. - DOI - PubMed

[10] Maeda R, Nagashima H, Widada J, Iwata K, Omori T. 2009. Novel marine carbazole-degrading bacteria. FEMS Microbiol Lett 292:203–209. doi:10.1111/j.1574-6968.2009.01497.x. - DOI - PubMed

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Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5

Affiliations

Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5

Authors

Affiliations

Abstract

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References

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