Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
- PMID: 36350631
- PMCID: PMC9825582
- DOI: 10.1093/nar/gkac1003
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Abstract
The National Institute of Allergy and Infectious Diseases (NIAID) established the Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the growing body of genome sequence and other omics-related data. In this report, we describe the merger of the PAThosystems Resource Integration Center (PATRIC), the Influenza Research Database (IRD) and the Virus Pathogen Database and Analysis Resource (ViPR) BRCs to form the Bacterial and Viral Bioinformatics Resource Center (BV-BRC) https://www.bv-brc.org/. The combined BV-BRC leverages the functionality of the bacterial and viral resources to provide a unified data model, enhanced web-based visualization and analysis tools, bioinformatics services, and a powerful suite of command line tools that benefit the bacterial and viral research communities.
Published by Oxford University Press on behalf of Nucleic Acids Research 2022.
Figures
![Figure 1.](https://www.ncbi.nlm.nih.gov/pmc/articles/instance/9825582/bin/gkac1003fig1.gif)
![Figure 2.](https://www.ncbi.nlm.nih.gov/pmc/articles/instance/9825582/bin/gkac1003fig2.gif)
![Figure 3.](https://www.ncbi.nlm.nih.gov/pmc/articles/instance/9825582/bin/gkac1003fig3.gif)
![Figure 4.](https://www.ncbi.nlm.nih.gov/pmc/articles/instance/9825582/bin/gkac1003fig4.gif)
![Figure 5.](https://www.ncbi.nlm.nih.gov/pmc/articles/instance/9825582/bin/gkac1003fig5.gif)
![Figure 6.](https://www.ncbi.nlm.nih.gov/pmc/articles/instance/9825582/bin/gkac1003fig6.gif)
Similar articles
-
Comparative Genomic Analysis of Bacterial Data in BV-BRC: An Example Exploring Antimicrobial Resistance.Methods Mol Biol. 2024;2802:547-571. doi: 10.1007/978-1-0716-3838-5_18. Methods Mol Biol. 2024. PMID: 38819571
-
Hepatitis C Virus Database and Bioinformatics Analysis Tools in the Virus Pathogen Resource (ViPR).Methods Mol Biol. 2019;1911:47-69. doi: 10.1007/978-1-4939-8976-8_3. Methods Mol Biol. 2019. PMID: 30593617
-
PATRIC, the bacterial bioinformatics database and analysis resource.Nucleic Acids Res. 2014 Jan;42(Database issue):D581-91. doi: 10.1093/nar/gkt1099. Epub 2013 Nov 12. Nucleic Acids Res. 2014. PMID: 24225323 Free PMC article.
-
Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center.Methods Mol Biol. 2018;1704:79-101. doi: 10.1007/978-1-4939-7463-4_4. Methods Mol Biol. 2018. PMID: 29277864 Review.
-
PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species.Infect Immun. 2011 Nov;79(11):4286-98. doi: 10.1128/IAI.00207-11. Epub 2011 Sep 6. Infect Immun. 2011. PMID: 21896772 Free PMC article. Review.
Cited by
-
A novel Microbacterium strain SRS2 promotes the growth of Arabidopsis and MicroTom (S. lycopersicum) under normal and salt stress conditions.Planta. 2024 Aug 25;260(4):79. doi: 10.1007/s00425-024-04510-2. Planta. 2024. PMID: 39182196
-
Impact of the chemical modification of tRNAs anticodon loop on the variability and evolution of codon usage in proteobacteria.Front Microbiol. 2024 Aug 5;15:1412318. doi: 10.3389/fmicb.2024.1412318. eCollection 2024. Front Microbiol. 2024. PMID: 39161601 Free PMC article.
-
Tracing the origin of NDM-1-producing and extensively drug-resistant Pseudomonas aeruginosa ST357 in the Netherlands.BMC Infect Dis. 2024 Aug 13;24(1):817. doi: 10.1186/s12879-024-09722-1. BMC Infect Dis. 2024. PMID: 39134941 Free PMC article.
-
Scandinavium lactucae sp. nov. Isolated from Healthy Lettuce in South Korea.Curr Microbiol. 2024 Aug 7;81(9):299. doi: 10.1007/s00284-024-03811-9. Curr Microbiol. 2024. PMID: 39110223 Free PMC article.
-
Discovery of antimicrobial peptides clostrisin and cellulosin from Clostridium: insights into their structures, co-localized biosynthetic gene clusters, and antibiotic activity.Beilstein J Org Chem. 2024 Jul 30;20:1800-1816. doi: 10.3762/bjoc.20.159. eCollection 2024. Beilstein J Org Chem. 2024. PMID: 39109298 Free PMC article.
References
Publication types
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources