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. 2024 Jul;162(1-2):23-40.
doi: 10.1007/s00418-024-02293-x. Epub 2024 May 14.

Behaviors of nucleosomes with mutant histone H4s in euchromatic domains of living human cells

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Behaviors of nucleosomes with mutant histone H4s in euchromatic domains of living human cells

Adilgazy Semeigazin et al. Histochem Cell Biol. 2024 Jul.

Abstract

Since Robert Feulgen first stained DNA in the cell, visualizing genome chromatin has been a central issue in cell biology to uncover how chromatin is organized and behaves in the cell. To approach this issue, we have developed single-molecule imaging of nucleosomes, a basic unit of chromatin, to unveil local nucleosome behavior in living cells. In this study, we investigated behaviors of nucleosomes with various histone H4 mutants in living HeLa cells to address the role of H4 tail acetylation, including H4K16Ac and others, which are generally associated with more transcriptionally active chromatin regions. We ectopically expressed wild-type (wt) or mutated H4s (H4K16 point; H4K5,8,12,16 quadruple; and H4 tail deletion) fused with HaloTag in HeLa cells. Cells that expressed wtH4-Halo, H4K16-Halo mutants, and multiple H4-Halo mutants had euchromatin-concentrated distribution. Consistently, the genomic regions of the wtH4-Halo nucleosomes corresponded to Hi-C contact domains (or topologically associating domains, TADs) with active chromatin marks (A-compartment). Utilizing single-nucleosome imaging, we found that none of the H4 deacetylation or acetylation mimicked H4 mutants altered the overall local nucleosome motion. This finding suggests that H4 mutant nucleosomes embedded in the condensed euchromatic domains with excess endogenous H4 nucleosomes cannot cause an observable change in the local motion. Interestingly, H4 with four lysine-to-arginine mutations displayed a substantial freely diffusing fraction in the nucleoplasm, whereas H4 with a truncated N-terminal tail was incorporated in heterochromatic regions as well as euchromatin. Our study indicates the power of single-nucleosome imaging to understand individual histone/nucleosome behavior reflecting chromatin environments in living cells.

Keywords: Acetylation; Chromatin; H4K16Ac; Histone H4; Nucleosome; Single-nucleosome imaging.

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References

    1. Allahverdi A, Yang R, Korolev N, Fan Y, Davey CA, Liu CF, Nordenskiold L (2011) The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association. Nucleic Acids Res 39(5):1680–1691. https://doi.org/10.1093/nar/gkq900 - DOI
    1. Amitai A, Seeber A, Gasser SM, Holcman D (2017) Visualization of chromatin decompaction and break site extrusion as predicted by statistical polymer modeling of single-locus trajectories. Cell Rep 18(5):1200–1214. https://doi.org/10.1016/j.celrep.2017.01.018 - DOI
    1. Ashwin SS, Nozaki T, Maeshima K, Sasai M (2019) Organization of fast and slow chromatin revealed by single-nucleosome dynamics. Proc Natl Acad Sci U S A 116(40):19939–19944. https://doi.org/10.1073/pnas.1907342116 - DOI
    1. Benedum J, Meusch M (1999) Robert Fuelgen (1884–1955) - some biographical thoughts. Histochem Cell Biol 111(5):337–343. https://doi.org/10.1007/s004180050366 - DOI
    1. Bennett RL, Bele A, Small EC, Will CM, Nabet B, Oyer JA, Huang X, Ghosh RP, Grzybowski AT, Yu T, Zhang Q, Riva A, Lele TP, Schatz GC, Kelleher NL, Ruthenburg AJ, Liphardt J, Licht JD (2019) A mutation in histone H2B represents a new class of oncogenic driver. Cancer Discov 9(10):1438–1451. https://doi.org/10.1158/2159-8290.CD-19-0393 - DOI

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