SPEM: a parser for EMBL style flat file database entries
- PMID: 9918956
- DOI: 10.1093/bioinformatics/14.9.823
SPEM: a parser for EMBL style flat file database entries
Abstract
Summary: We present a set of Perl modules for the flexible and robust parsing and editing of EMBL/SWISS-PROT databases.
Availability: The Web page at http://www.sanger.ac. uk/Software/PerlModule/ provides information about downloading the SPEM and PrEMBL modules, and provides links to documentation and example code.
Similar articles
-
Sustainable digital infrastructure. Although databases and other online resources have become a central tool for biological research, their long-term support and maintenance is far from secure.EMBO Rep. 2010 Oct;11(10):730-4. doi: 10.1038/embor.2010.145. Epub 2010 Sep 17. EMBO Rep. 2010. PMID: 20847740 Free PMC article. Review.
-
The EMBL sequence version archive.Bioinformatics. 2003 Sep 22;19(14):1861-2. doi: 10.1093/bioinformatics/btg248. Bioinformatics. 2003. PMID: 14512364
-
Swissknife - 'lazy parsing' of SWISS-PROT entries.Bioinformatics. 1999 Sep;15(9):771-2. doi: 10.1093/bioinformatics/15.9.771. Bioinformatics. 1999. PMID: 10498781
-
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.Nucleic Acids Res. 1999 Jan 1;27(1):49-54. doi: 10.1093/nar/27.1.49. Nucleic Acids Res. 1999. PMID: 9847139 Free PMC article.
-
SWISS-2DPAGE: a database of two-dimensional gel electrophoresis images.Electrophoresis. 1993 Nov;14(11):1232-8. doi: 10.1002/elps.11501401185. Electrophoresis. 1993. PMID: 8313872 Review.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources