HyPhy: hypothesis testing using phylogenies

SLK Pond, SDW Frost, SV Muse - Bioinformatics, 2005 - academic.oup.com
Bioinformatics, 2005academic.oup.com
The HyPhy package is designed to provide a flexible and unified platform for carrying out
likelihood-based analyses on multiple alignments of molecular sequence data, with the
emphasis on studies of rates and patterns of sequence evolution. Availability: http://www.
hyphy. org Contact: muse@ stat. ncsu. edu Supplementary information: HyPhy
documentation and tutorials are available at http://www. hyphy. org
Abstract
Summary: The HyPhypackage is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution.
Availability:  http://www.hyphy.org
Contact:  muse@stat.ncsu.edu
Supplementary information:  HyPhydocumentation and tutorials are available at http://www.hyphy.org
Oxford University Press