Structural analysis of substrate binding by the molecular chaperone DnaK

X Zhu, X Zhao, WF Burkholder, A Gragerov, CM Ogata… - Science, 1996 - science.org
X Zhu, X Zhao, WF Burkholder, A Gragerov, CM Ogata, ME Gottesman, WA Hendrickson
Science, 1996science.org
DnaK and other members of the 70-kilodalton heat-shock protein (hsp70) family promote
protein folding, interaction, and translocation, both constitutively and in response to stress,
by binding to unfolded polypeptide segments. These proteins have two functional units: a
substrate-binding portion binds the polypeptide, and an adenosine triphosphatase portion
facilitates substrate exchange. The crystal structure of a peptide complex with the substrate-
binding unit of DnaK has now been determined at 2.0 Å resolution. The structure consists of …
DnaK and other members of the 70-kilodalton heat-shock protein (hsp70) family promote protein folding, interaction, and translocation, both constitutively and in response to stress, by binding to unfolded polypeptide segments. These proteins have two functional units: a substrate-binding portion binds the polypeptide, and an adenosine triphosphatase portion facilitates substrate exchange. The crystal structure of a peptide complex with the substrate-binding unit of DnaK has now been determined at 2.0 Å resolution. The structure consists of a β-sandwich subdomain followed by α-helical segments. The peptide is bound to DnaK in an extended conformation through a channel defined by loops from the β sandwich. An α-helical domain stabilizes the complex, but does not contact the peptide directly. This domain is rotated in the molecules of a second crystal lattice, which suggests a model of conformation-dependent substrate binding that features a latch mechanism for maintaining long lifetime complexes.
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