BV-BRC Documentation

Updates and Reports

• News and Announcements
  • Archives 2023
  • Archives 2022
  • Archives 2021
  • Archives 2020
• Reports and Analysis
  • SARS-CoV-2 Analysis Reports
  • SARS-CoV-2 Emerging Variants Reports
  • H5N1 2024 Influenza A Virus: HPAI Outbreak Reports

Help Resources:

• Overview
  • About BV-BRC
  • Help Documentation Organization
• Quick Start
  • Quick Start Videos
  • Data and Functionality Overview (for PATRIC Users)
  • Terminology and Features (for IRD/ViPR Users)
• Data Sources and Protocols
  • Genome Annotation Protocol
  • Antimicrobial Resistance (AMR)
• Quick Reference Guides
  • Organisms and Data Types
  • Advanced Searches
  • Tools & Services
  • Workspaces and Groups
  • Global Search
  • Registration and Sign In
  • Website Views, Tables, Filters, Action Bar
  • System Requirements
  • FTP Site
• Tutorials
  • Genomics
  • Phylogenomics Services
  • Protein Tools
  • Metagenomics
  • Transcriptomics
  • Utilities
  • Viral Services
  • Data Visualizations
• Command Line Interface
  • Installing the CLI Release
  • Tutorials and Reference Documentation
  • RAST Tutorials
• Instructional Videos
  • Quick Start
  • Analysis Services
  • Visualizations and Other Tools
  • Command Line Interface
• Webinars
  • Back to Basics Virus Series
  • Finding and Analyzing RSV and Influenza Data in the BV-BRC
  • Monkeypox and Orthopoxvirus Mini Symposium
  • Ticks and Tick-Borne Pathogens
  • Introduction to BV-BRC
• Workshops
  • Workshop Schedule

System Documentation:

• Data Management and Sharing
  • Data Types
  • Standards
  • Access, Distribution, or Reuse Considerations
  • Oversight of Data Management and Sharing
• Data
  • Genomes
  • Genome Metadata
  • Antimicrobial Resistance Data and Metadata
  • Other Clinical Metadata
  • Annotated Genome Features
  • Specialty Genes
  • Other Annotations
  • Protein Families
  • Pathways
  • Phylogenetic Trees
  • Differential Expression Data
  • Protein-Protein Interactions
  • Protein Structures
  • Other Special Data Sets
• Database
  • Data Types
  • Database Schema
  • Data Dictionaries
• Capabilities And Functionality
  • Data Type Pages/Tabs
  • Tools and Visualizations
  • Services
  • Project Information Pages
• Software Tools And Code
  • Data Processing Software
  • Software Tools
  • Other Software Code
• System Architecture
  • Overview
  • Software Architecture
  • BV-BRC Website
• Documentation
  • User Documentation
  • Administrator Documentation
  • Software Documentation
• Accounts
• Test Procedures
  • Plans and Reports
  • Test Procedure Reports
• Usage Metrics
  • Performance Metrics
  • Usage Metrics
  • Website Statistics