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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS2403.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
2403.1 |
Public |
Homo sapiens |
2 |
SMARCAL1 |
24 |
110 |
108 |
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Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 2403.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENST00000357276.9 |
ENSP00000349823.4 |
MANE Select |
Accepted |
alive |
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EBI |
ENST00000358207.9 |
ENSP00000350940.5 |
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Accepted |
alive |
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EBI |
ENST00000425815.6 |
ENSP00000394410.2 |
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Accepted |
alive |
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EBI |
ENST00000444508.6 |
ENSP00000398969.2 |
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Accepted |
alive |
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EBI |
ENST00000430374.6 |
ENSP00000405077.2 |
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Accepted |
alive |
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NCBI |
NM_001127207.2 |
NP_001120679.1 |
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Accepted |
alive |
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NCBI |
NM_014140.4 |
NP_054859.2 |
MANE Select |
Accepted |
alive |
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Chromosomal Locations for CCDS 2403.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2865 nt): ATGTCCTTGCCTCTTACAGAGGAGCAGAGGAAAAAGATTGAAGAGAATCGACAAAAGGCTCTGGCCCGCA GAGCTGAGAAGTTATTGGCAGAACAGCATCAGAGGACTAGCTCGGGCACCTCCATTGCTGGCAACCCATT CCAGGCCAAGCAAGGCCCATCCCAAAATTTCCCAAGGGAGTCTTGTAAGCCAGTGAGCCATGGTGTCATT TTCAAGCAACAGAATCTCAGTAGCTCATCTAATGCTGACCAAAGACCTCATGATTCCCACAGTTTTCAGG CAAAGGGAATATGGAAAAAGCCAGAAGAAATGCCCACAGCCTGCCCAGGCCACAGTCCACGTAGTCAAAT GGCTCTCACTGGAATCTCTCCTCCCTTGGCACAAAGTCCTCCAGAGGTCCCTAAACAACAGCTCTTGAGT TATGAGTTAGGTCAAGGTCATGCTCAGGCTTCACCTGAGATCAGGTTCACACCCTTTGCTAACCCAACTC ATAAGCCTCTGGCCAAACCAAAGAGTTCCCAAGAGACACCAGCTCATTCCTCTGGACAGCCTCCCAGGGA TGCTAAGTTAGAGGCCAAGACAGCAAAAGCCTCCCCTTCGGGGCAGAACATTTCTTACATCCATTCTAGC TCAGAGAGTGTAACGCCCAGGACAGAAGGAAGACTCCAGCAGAAGTCAGGGTCCTCAGTCCAAAAAGGAG TGAACTCTCAGAAGGGAAAGTGCGTAAGGAACGGCGATCGTTTCCAGGTGTTGATTGGGTACAATGCGGA ACTCATTGCAGTGTTTAAGACCCTGCCCAGCAAGAATTATGATCCTGACACCAAGACGTGGAACTTCAGC ATGAATGACTATAGTGCCCTGATGAAAGCAGCCCAGAGCCTCCCCACGGTCAACCTGCAGCCTCTGGAAT GGGCCTATGGCAGCAGCGAGTCACCCTCCACCAGCAGTGAGGGACAGGCCGGCCTTCCATCAGCTCCATC CCTTTCATTTGTCAAAGGGCGATGCATGCTCATCTCCAGGGCCTACTTCGAGGCAGACATCAGTTATTCA CAGGACCTTATTGCGCTTTTTAAACAGATGGATTCCAGAAGATATGATGTCAAGACCAGGAAGTGGAGCT TTCTCTTGGAAGAGCACAGTAAACTAATTGCAAAGGTGCGCTGCCTCCCACAAGTTCAGCTGGACCCTCT GCCCACGACTCTCACCCTGGCGTTTGCTTCTCAGCTCAAGAAGACATCTCTCAGTCTCACGCCAGATGTC CCAGAGGCAGACCTTTCTGAAGTGGACCCCAAGCTCGTGTCTAATCTGATGCCCTTTCAGAGAGCTGGAG TCAATTTTGCCATAGCCAAAGGAGGCCGCCTGCTGCTCGCTGACGACATGGGCCTGGGGAAGACCATCCA AGCCATCTGCATCGCAGCCTTTTACCGGAAGGAGTGGCCGCTCCTGGTGGTGGTGCCATCCTCCGTGCGC TTCACCTGGGAGCAGGCCTTCCTTCGGTGGCTGCCATCTCTGAGCCCAGATTGCATCAACGTCGTGGTGA CTGGGAAGGACCGCCTGACAGCTGGCCTGATCAACATTGTCAGCTTTGACCTTCTTAGCAAGTTGGAAAA ACAGCTAAAAACCCCTTTTAAAGTTGTCATCATTGATGAATCTCACTTCCTCAAAAACAGTAGGACTGCC CGCTGTCGAGCAGCTATGCCGGTCCTAAAGGTTGCCAAGAGGGTGATCCTGTTGTCGGGCACACCAGCCA TGTCCCGGCCCGCAGAGCTCTACACGCAGATCATCGCAGTCAAGCCAACTTTCTTCCCCCAGTTTCATGC CTTTGGACTTCGCTACTGTGATGCCAAACGGATGCCTTGGGGGTGGGACTACTCAGGTTCCTCCAACCTG GGAGAGCTGAAGCTCCTGCTGGAGGAAGCAGTCATGCTGCGGCGCCTCAAGTCCGACGTCCTTTCCCAGC TGCCTGCCAAGCAGCGCAAGATAGTGGTGATTGCCCCAGGACGGATCAATGCCAGGACCAGAGCTGCCCT GGATGCTGCAGCCAAGGAAATGACCACCAAGGACAAAACTAAACAGCAGCAGAAAGATGCCCTCATTCTC TTCTTCAACAGAACAGCTGAAGCTAAAATCCCATCTGTCATTGAATATATCTTGGACCTACTGGAAAGTG GAAGAGAGAAGTTTTTAGTATTTGCACACCATAAGGTGGTCCTGGACGCAATTACGCAAGAGCTTGAGAG AAAGCACGTGCAGCACATCCGCATCGATGGCTCCACCTCATCAGCTGAGCGGGAGGACCTGTGCCAGCAG TTCCAACTGTCGGAGAGGCATGCTGTGGCCGTGCTGTCCATCACCGCTGCCAATATGGGCCTCACCTTCT CCTCGGCTGACCTGGTGGTGTTTGCTGAGCTGTTTTGGAACCCAGGGGTGCTGATCCAGGCTGAGGACCG CGTGCACCGCATTGGACAGACCAGCTCCGTGGGCATTCACTACCTCGTGGCAAAGGGCACAGCTGATGAC TACCTTTGGCCCCTGATTCAAGAGAAGATTAAAGTTCTGGCAGAAGCCGGGCTTTCTGAGACCAATTTTT CAGAAATGACAGAATCCACTGATTACCTCTACAAGGACCCAAAGCAGCAGAAGATCTACGACCTATTCCA GAAGTCCTTTGAGAAAGAAGGAAGTGATATGGAGCTCCTGGAAGCAGCAGAGTCCTTTGACCCAGGAAGT GCTTCAGGAACATCTGGAAGTAGTTCCCAGAACATGGGAGACACCCTGGATGAAAGCTCATTGACAGCCA GTCCACAGAAGAAAAGGAGATTTGAATTTTTTGATAACTGGGACAGCTTTACGTCTCCCCTGTAA
Translation (954 aa): MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRESCKPVSHGVI FKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALTGISPPLAQSPPEVPKQQLLS YELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHSSGQPPRDAKLEAKTAKASPSGQNISYIHSS SESVTPRTEGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKTWNFS MNDYSALMKAAQSLPTVNLQPLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGRCMLISRAYFEADISYS QDLIALFKQMDSRRYDVKTRKWSFLLEEHSKLIAKVRCLPQVQLDPLPTTLTLAFASQLKKTSLSLTPDV PEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVR FTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNSRTA RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNL GELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL FFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQ FQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADD YLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELLEAAESFDPGS ASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL
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