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Definitions for dir

Type Member of File Line
function prototype or declaration /include/corelib/ncbifile.hpp 3155
function prototype or declaration /include/corelib/ncbifile.hpp 3173
function prototype or declaration /include/corelib/ncbifile.hpp 3230
function prototype or declaration /include/corelib/ncbifile.hpp 3248
function prototype or declaration /include/db/bdb/bdb_ext_blob.hpp 515
function prototype or declaration /include/db/bdb/bdb_ext_blob.hpp 521
function prototype or declaration /src/algo/align/splign/compart_matching.cpp 319
function prototype or declaration /src/algo/align/splign/compart_matching.cpp 1243
function prototype or declaration /src/algo/align/splign/compart_matching.cpp 1454
function prototype or declaration /src/app/asn_cache/prime_cache.cpp 1206
function prototype or declaration /src/app/asnval/asnval.cpp 377
function prototype or declaration /src/app/biosample_chk/biosample_chk.cpp 652
function prototype or declaration /src/app/blastdb/blastdbcheck.cpp 430
function prototype or declaration /src/app/blastdb/blastdbcheck.cpp 706
function prototype or declaration /src/app/multireader/multifile_destination.cpp 45
function prototype or declaration /src/app/netcache/nc_storage.cpp 522
function prototype or declaration /src/app/netstorage/nst_server.cpp 570
function prototype or declaration /src/app/splign/splign_app.cpp 642
function prototype or declaration /src/app/split_cache/split_cache.cpp 337
function prototype or declaration /src/app/tls/tls.cpp 412
function prototype or declaration /src/build-system/project_tree_builder/msvc_prj_files_collector.cpp 140
function prototype or declaration /src/build-system/project_tree_builder/msvc_prj_files_collector.cpp 412
function prototype or declaration /src/build-system/project_tree_builder/prj_file_collector.cpp 221
function prototype or declaration /src/build-system/project_tree_builder/prj_file_collector.cpp 374
function prototype or declaration /src/build-system/project_tree_builder/proj_builder_app.cpp 232
function prototype or declaration /src/build-system/project_tree_builder/proj_builder_app.cpp 1804
function prototype or declaration /src/build-system/project_tree_builder/proj_tree_builder.cpp 2903
function prototype or declaration /src/build-system/project_tree_builder/proj_tree_builder.cpp 3102
function prototype or declaration /src/build-system/project_tree_builder/proj_tree_builder.cpp 3125
function prototype or declaration /src/build-system/project_tree_builder/proj_tree_builder.cpp 3138
function prototype or declaration /src/build-system/project_tree_builder/proj_tree_builder.cpp 3151
function prototype or declaration /src/build-system/project_tree_builder/proj_tree_builder.cpp 3166
function prototype or declaration /src/build-system/project_tree_builder/proj_tree_builder.cpp 3204
function prototype or declaration /src/corelib/test/test_ncbifile.cpp 837
function prototype or declaration /src/db/bdb/bdb_blobcache.cpp 1254
function prototype or declaration /src/db/bdb/bdb_blobcache.cpp 4545
function prototype or declaration /src/db/bdb/bdb_env.cpp 468
function prototype or declaration /src/db/bdb/bdb_env.cpp 491
function prototype or declaration /src/db/bdb/bdb_util.cpp 268
function prototype or declaration /src/db/bdb/bdb_volumes.cpp 90
function prototype or declaration /src/db/bdb/bdb_volumes.cpp 100
function prototype or declaration /src/db/bdb/test/test_bdb_bvstore.cpp 227
function prototype or declaration /src/db/bdb/test/test_bdb_thr.cpp 217
function prototype or declaration /src/gui/core/ws_auto_saver.cpp 289
function prototype or declaration /src/gui/framework/pkg_manager.cpp 112
function prototype or declaration /src/gui/objutils/blast_databases.cpp 257
function prototype or declaration /src/gui/packages/pkg_sequence/orf_search_tool.cpp 447
function prototype or declaration /src/gui/packages/pkg_sequence/sequence_search_tool.cpp 479
function prototype or declaration /src/gui/packages/pkg_sequence/windowmasker_tool.cpp 129
function prototype or declaration /src/gui/packages/pkg_sequence_edit/editingbtnspanel.cpp 4135
function prototype or declaration /src/gui/utils/download_job.cpp 534
function prototype or declaration /src/gui/widgets/aln_multiple/wx_export_alnmulti_img_dlg.cpp 236
function prototype or declaration /src/gui/widgets/aln_multiple/wx_export_alnmulti_img_dlg.cpp 290
function prototype or declaration /src/gui/widgets/data/report_dialog.cpp 80
function prototype or declaration /src/gui/widgets/edit/macrofloweditor.cpp 686
function prototype or declaration /src/gui/widgets/loaders/lblast_params_panel.cpp 301
function prototype or declaration /src/gui/widgets/loaders/winmask_files.cpp 211
function prototype or declaration /src/gui/widgets/loaders/winmask_files.cpp 241
function prototype or declaration /src/gui/widgets/seq_graphic/cgi-demo/seqtest.cpp 89
function prototype or declaration /src/gui/widgets/seq_graphic/wx_export_vector_image_dlg.cpp 330
function prototype or declaration /src/gui/widgets/seq_graphic/wx_export_vector_image_dlg.cpp 490
function prototype or declaration /src/gui/widgets/wx/advanced_file_input.cpp 203
function prototype or declaration /src/gui/widgets/wx/fileartprov.cpp 147
function prototype or declaration /src/gui/widgets/wx/fileartprov.cpp 202
function prototype or declaration /src/gui/widgets/wx/ui_tool_registry.cpp 172
function prototype or declaration /src/gui/widgets/wx/wx_save_pdf_base_dlg.cpp 305
function prototype or declaration /src/gui/widgets/wx/wx_save_pdf_base_dlg.cpp 363
function prototype or declaration /src/gui/widgets/wx/wx_utils.cpp 135
function prototype or declaration /src/objtools/blast/gene_info_reader/file_utils.cpp 56
function prototype or declaration /src/objtools/lds2/lds2.cpp 932
function prototype or declaration /src/sample/app/objmgr/file_db_engine.cpp 77
function prototype or declaration /src/sample/app/objmgr/file_db_engine.cpp 178
function prototype or declaration /src/serial/datatool/filecode.cpp 232
function prototype or declaration /src/util/file_obsolete.cpp 67

74 declarations in 49 files.

References to dir

File Line
/compilers/cygwin/build.sh 64 66 71 75
/compilers/unix/ICC.sh 58 59 60 61 62 63 64
/include/algo/align/advanced_cleanup/advanced_cleanup.hpp 146
/include/connect/ncbi_connection.h 399
/include/connect/ncbi_socket.hpp 1110 1112
/include/corelib/ncbi_process.hpp 896
/include/corelib/ncbifile.hpp 304 324 365 606 652 1469 1540 1707 1747 3023 3034 3043 3044 3076 3087 3096 3097 3155 3156 3173 3174 3230 3231 3248 3249 3499 3982 3985 3990 3992 4060 4060
/include/db/bdb/bdb_ext_blob.hpp 515 516 517 521 522 523
/include/gui/objutils/sparse_alignment.hpp 105 108
/include/gui/packages/pkg_sequence_edit/discrepancy_dlg.hpp 270 270
/include/gui/packages/pkg_sequence_edit/orginfo_panel.hpp 77
/include/gui/packages/pkg_sequence_edit/sub_validate_disc_tab.hpp 74
/include/gui/packages/pkg_sequence_edit/subannotation_panel.hpp 67
/include/gui/packages/pkg_sequence_edit/subdiscrepancy_panel.hpp 70
/include/gui/utils/intersect.hpp 71 85 108 115 141 151 157
/include/gui/widgets/aln_multiple/align_row.hpp 224 234
/include/gui/widgets/aln_multiple/alnmulti_ds.hpp 76 79 246 250
/include/gui/widgets/aln_multiple/alnvec_multi_ds.hpp 106 109
/include/gui/widgets/aln_multiple/alnvec_row_handle.hpp 65 68
/include/gui/widgets/aln_multiple/sparse_multi_ds.hpp 111 115
/include/gui/widgets/aln_multiple/sparse_row_handle.hpp 63 66
/include/gui/widgets/aln_score/scoring_method.hpp 124
/include/gui/widgets/edit/macro_treeitemdata.hpp 254
/include/gui/widgets/grid_widget/grid_widget.hpp 153
/include/gui/widgets/grid_widget/wxgrid_table_adapter.hpp 116
/include/gui/widgets/hit_matrix/dense_hit.hpp 102
/include/gui/widgets/hit_matrix/std_seg_hit.hpp 106
/include/gui/widgets/phylo_tree/phylo_tree_boundary_shapes.hpp 338
/include/gui/widgets/phylo_tree/phylo_tree_widget.hpp 332 357
/include/gui/widgets/seq_graphic/alngraphic_ds.hpp 183
/include/gui/widgets/seq_graphic/alnvec_graphic_ds.hpp 78 83
/include/gui/widgets/seq_graphic/denseg_graphic_ds.hpp 87 92
/include/gui/widgets/seq_graphic/rendering_ctx.hpp 256
/include/gui/widgets/seq_graphic/simple_graphic_ds.hpp 89 94
/include/gui/widgets/seq_graphic/sparsealn_graphic_ds.hpp 83 88
/include/gui/widgets/wx/image_grabber.hpp 128
/include/gui/widgets/wx/multi_file_input.hpp 90 98
/include/gui/widgets/wx/wx_utils.hpp 96
/include/objects/seq/seq_loc_mapper_base.hpp 408 613
/include/objmgr/seq_loc_mapper.hpp 103
/include/objmgr/util/feature.hpp 510
/include/objtools/alnmgr/alnmap.hpp 198 203 208 213 359
/include/objtools/alnmgr/sparse_aln.hpp 127 130
/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp 875 878 888 891
/include/objtools/writers/fasta_writer.hpp 193
/include/util/align_range_coll.hpp 410 416 416 422 422 435 438 442 456 461 465 1281 1287 1287 1293 1293 1306 1309 1313 1330 1341 1370 1375 1379
/include/util/compress/stream.hpp 150 172 175 178 180 390 392 448 449 453 455 459 460 464 465 469 471
/scripts/common/check/inspxe.sh 40 49
/scripts/common/common.sh 307
/scripts/common/impl/compress_tests.sh 19 29 50
/scripts/common/impl/create_flat_makefile.sh 46 47
/scripts/common/impl/create_flat_submakefile.awk 55 56 62 63 72 113 114 116 126 126 128 129 129 130 131 132 134 136
/scripts/common/impl/create_flat_tuneups.sh 37 72
/scripts/common/impl/favor-static 31
/scripts/common/impl/generate_all_objects.sh 74 77 80 82 84 89
/scripts/common/impl/get_lock.sh 6 24 27 57 64 75 78 98 98 99 99 100
/scripts/common/impl/install.sh 48 49
/scripts/common/project_utilits.js 863 864 887 888 908 909
/src/algo/align/advanced_cleanup/advanced_cleanup.cpp 608 610 625 651
/src/algo/align/splign/compart_matching.cpp 250 251 262 263 265 266 319 322 1243 1249 1250 1454 1460
/src/algo/align/util/align_sort.cpp 213 215 218
/src/algo/blast/core/blast_itree.c 60 83 102
/src/algo/blast/core/hspfilter_culling.c 228 239
/src/algo/blast/format/blast_format.cpp 2303 2306 2312 2497 2498 2500 2501
/src/algo/sequence/demo/xcompareannotsdemo.cpp 615 616
/src/app/asn2fasta/asn2fasta.cpp 1186 1189 1189 1190 1202 1204
/src/app/asn_cache/prime_cache.cpp 1206 1207 1208
/src/app/asn_cleanup/asn_cleanup.cpp 107 603 608 1088 1105 1114
/src/app/asnval/asnval.cpp 377 385 431
/src/app/biosample_chk/biosample_chk.cpp 652 653 664
/src/app/blastdb/blastdbcheck.cpp 430 432 706 749 752 755 808 832 837 1038 1043 1413 1418 1426
/src/app/cn3d/structure_window.cpp 1691 1693 1693 1693
/src/app/grid/remote_app/exec_helpers.cpp 112 114 116
/src/app/magicblast/magicblast_app.cpp 489 491 492 493
/src/app/multireader/multifile_destination.cpp 45 46
/src/app/netcache/nc_storage.cpp 522 523 524
/src/app/netstorage/nst_server.cpp 570 571
/src/app/oligofar/cguidefile.cpp 10 12
/src/app/oligofar/cguidefile.hpp 57
/src/app/pubseq_gateway/client/misc/graphs.bash 32 34 38 56 66 75 136 155 161
/src/app/splign/splign_app.cpp 642 643
/src/app/split_cache/split_cache.cpp 337 338 339 520 523 523 525 526
/src/app/table2asn/table2asn.cpp 1563 1566 1568
/src/app/table2asn/table2asn_context.cpp 297 306 307 308 309 312
/src/app/tls/tls.cpp 412 415
/src/build-system/configure 517 518 520 521 530 540 541 2051 2054 2054 2212 6713 6716 6719 6720 6735 10944 14015 14019 14020 14372 14787 14787 14803 14803 23912 23913 23914 23948 38432 38433 38435 38436 38445 38455 38456
/src/build-system/project_tree_builder/configurable_file.cpp 48 49 50 52
/src/build-system/project_tree_builder/msvc_configure.cpp 59 65 90 91 92 94 124 271 272 273 313 314 315 473 474 553 554
/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp 242 243 244 246
/src/build-system/project_tree_builder/msvc_dlls_info.cpp 183 185 186
/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp 210 211 212 214
/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp 140 143 144 145 146 147 152 412 413 415
/src/build-system/project_tree_builder/msvc_prj_utils.cpp 68 69 70 72
/src/build-system/project_tree_builder/msvc_project_context.cpp 84 85 86 303 336 339 339 340 341 352 355 369 370 371 371 372 372 375 378
/src/build-system/project_tree_builder/prj_file_collector.cpp 221 222 225 255 261 263 266 278 284 286 289 374 377 378 379 380 381 386
/src/build-system/project_tree_builder/proj_builder_app.cpp 185 186 215 216 232 233 258 261 263 273 273 274 274 309 310 1804 1805 1806 2440 2442 2442 2443 2948 2959
/src/build-system/project_tree_builder/proj_builder_app.hpp 210
/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp 105 108 110 116 139
/src/build-system/project_tree_builder/proj_src_resolver.cpp 103 105 156 157 159
/src/build-system/project_tree_builder/proj_tree.cpp 700 702
/src/build-system/project_tree_builder/proj_tree.hpp 236
/src/build-system/project_tree_builder/proj_tree_builder.cpp 407 410 410 411 411 413 417 418 418 419 419 421 427 430 430 431 431 433 439 440 440 441 452 453 454 455 457 458 459 462 486 487 488 758 763 2903 2905 2909 3102 3103 3113 3125 3126 3138 3139 3151 3153 3166 3167 3171 3204 3205
/src/build-system/project_tree_builder/proj_tree_builder.hpp 102
/src/build-system/project_tree_builder_gui/src/ptbgui/PtbguiMain.java 176
/src/check/check.sh 221 290 291 301 302 304 305 320 321 323 324 344 345 398 400 400 401 402 449 453 454 475 476
/src/connect/mbedtls/x509_crt.c 1597 1599 1605 1612 1650
/src/connect/ncbi_conn_stream.cpp 133 135
/src/connect/ncbi_connection.c 1118 1122 1122 1137 1157
/src/connect/ncbi_file_connector.c 89 264 268
/src/connect/ncbi_ftp_connector.c 756 763 764 765 765 766
/src/connect/ncbi_http_connector.c 2435 2678 2681
/src/connect/ncbi_memory_connector.c 81 179 182
/src/connect/ncbi_namedpipe.cpp 812 1140 1146 1148
/src/connect/ncbi_namedpipe_connector.cpp 132 135
/src/connect/ncbi_pipe_connector.cpp 172 175
/src/connect/ncbi_socket.c 3916 3926 3953 3967 3968 3968 3969 3975 4003 4014 4017 4026 4034 4053 4054 6798 6818 6818 6822 6826
/src/connect/ncbi_socket_connector.c 126 230 234
/src/connect/services/remote_app.cpp 317 318 319
/src/connect/test/test_ncbi_conn.cpp 145 147 149
/src/connect/test/test_ncbi_pipe.cpp 566 569 572 588
/src/corelib/metareg.cpp 176 177 178 256 257 258 291 297 373 375 376 378
/src/corelib/ncbi_os_unix.cpp 510 511 512 515 530 531 532 535
/src/corelib/ncbi_process.cpp 1723 1724 1725 1738 1744 1747
/src/corelib/ncbi_system.cpp 1096 1097 1098 1101 1157 1158 1159 1161
/src/corelib/ncbiapp.cpp 1255 1256 1257 1542 1543 1545
/src/corelib/ncbidiag.cpp 7534 7535 7535
/src/corelib/ncbidll.cpp 354 356 357 370 371 372 419 420 422
/src/corelib/ncbiexec.cpp 870 871 873
/src/corelib/ncbifile.cpp 358 366 367 381 399 400 413 419 420 477 478 479 482 553 554 558 567 570 576 579 581 581 588 699 700 701 703 704 2926 2928 2940 2945 3038 3042 3719 3721 3722 3921 3922 3930 3943 3996 3997 4005 4012 6561 6570
/src/corelib/test/test_ncbifile.cpp 71 74 75 81 82 88 89 97 98 124 125 156 157 161 164 165 169 176 194 196 196 837 838 848 891 892 895 897 900 904 905 982 983 984 985 1020 1040 1042
/src/corelib/test/test_trial_check.cpp 41 42 43
/src/db/bdb/bdb_blobcache.cpp 1254 1255 1266 1278 1279 4545 4551 4552
/src/db/bdb/bdb_env.cpp 468 469 491 492 493
/src/db/bdb/bdb_util.cpp 268 269 270 275 276 286 287 288
/src/db/bdb/bdb_volumes.cpp 90 91 92 100 101
/src/db/bdb/test/test_bdb_bvstore.cpp 227 228 229
/src/db/bdb/test/test_bdb_thr.cpp 217 218 219
/src/dbapi/driver/ftds100/freetds/odbc/unittests/cursor5.c 14 18 21 23
/src/dbapi/driver/ftds100/freetds/tds/config.c 1037 1055 1056 1066 1069
/src/dbapi/driver/ftds100/freetds/tds/tls.c 301 312 313 324 327 344
/src/dbapi/driver/ftds14/freetds/odbc/unittests/cursor5.c 14 18 21 23
/src/dbapi/driver/ftds14/freetds/tds/config.c 1072 1090 1091 1101 1104
/src/dbapi/driver/ftds14/freetds/tds/tls.c 308 319 320 331 334 351
/src/gui/app/project_tools/gbproject_tool.cpp 279 282
/src/gui/cache/sqlite_cache.cpp 500 501 503
/src/gui/cache/sqlite_cache_factory.cpp 109 110 111 111 112 112 114 116
/src/gui/core/ws_auto_saver.cpp 289 290
/src/gui/framework/pkg_manager.cpp 112 113 129 131
/src/gui/framework/workbench_impl.cpp 385 386
/src/gui/objutils/blast_databases.cpp 155 212 213 257 258
/src/gui/objutils/sparse_alignment.cpp 237 240 258 264 270 276
/src/gui/objutils/sparse_functions.cpp 72 83 87 88 91
/src/gui/objutils/test_bm/test_bm.cpp 92 93 94 94 95 96 97 97 100 101
/src/gui/packages/pkg_sequence/orf_search_tool.cpp 447 450 480
/src/gui/packages/pkg_sequence/sequence_search_tool.cpp 446 454 458 461 479 482 510
/src/gui/packages/pkg_sequence/windowmasker_tool.cpp 129 130 133 135
/src/gui/packages/pkg_sequence_edit/editingbtnspanel.cpp 4135 4136
/src/gui/packages/pkg_sequence_edit/orginfo_panel.cpp 78 79
/src/gui/packages/pkg_sequence_edit/sub_validate_disc_tab.cpp 70 72
/src/gui/packages/pkg_sequence_edit/subannotation_panel.cpp 80 81
/src/gui/packages/pkg_sequence_edit/subdiscrepancy_panel.cpp 70 72
/src/gui/utils/browser_utils.cpp 58 62 82 85
/src/gui/utils/download_job.cpp 534 535
/src/gui/utils/test/test_intersect.cpp 109 113
/src/gui/widgets/aln_crossaln/cross_panel_ir.cpp 202 209
/src/gui/widgets/aln_multiple/align_mark_handler.cpp 553 556
/src/gui/widgets/aln_multiple/align_row.cpp 2547 2553 2554 2567 2570
/src/gui/widgets/aln_multiple/alnvec_multi_ds.cpp 553 557 562 565
/src/gui/widgets/aln_multiple/alnvec_row_handle.cpp 99 103 118 122
/src/gui/widgets/aln_multiple/sparse_multi_ds.cpp 323 326 331 334
/src/gui/widgets/aln_multiple/sparse_row_handle.cpp 112 115 120 123
/src/gui/widgets/aln_multiple/wx_export_alnmulti_img_dlg.cpp 236 238 290 291
/src/gui/widgets/aln_table/annot_filter_dlg.cpp 66 68 69 70 71 72 73 74 75
/src/gui/widgets/data/report_dialog.cpp 80 81 82
/src/gui/widgets/edit/macro_treeitemdata.cpp 2760 2764 2772
/src/gui/widgets/edit/macrofloweditor.cpp 649 657 658 686 687 688
/src/gui/widgets/grid_widget/grid_widget.cpp 471 476
/src/gui/widgets/grid_widget/wxgrid_table_adapter.cpp 699 710 727 749
/src/gui/widgets/hit_matrix/dense_hit.cpp 48 58 59
/src/gui/widgets/hit_matrix/std_seg_hit.cpp 58 72 73
/src/gui/widgets/loaders/lblast_params_panel.cpp 301 302 307 312
/src/gui/widgets/loaders/winmask_files.cpp 177 178 182 188 211 212 218 229 241 242
/src/gui/widgets/phylo_tree/phylo_tree_boundary_shapes.cpp 586 597 607
/src/gui/widgets/phylo_tree/phylo_tree_node.cpp 953 958 968 969
/src/gui/widgets/phylo_tree/phylo_tree_render.cpp 1086 1087 1088 1089 1100
/src/gui/widgets/phylo_tree/phylo_tree_widget.cpp 2384 2389
/src/gui/widgets/seq_graphic/alnvec_graphic_ds.cpp 166 169 175 178
/src/gui/widgets/seq_graphic/cgi-demo/seqtest.cpp 89 90
/src/gui/widgets/seq_graphic/denseg_graphic_ds.cpp 219 241 242 243 246 247 248 254 255 256 268 271 272 273 287 313 314 315 318 319 320 326 327 328 340 342 343 344
/src/gui/widgets/seq_graphic/histogram_glyph.cpp 204 207 214 242 1166 1172 1174 1174 1199 1507 1511 1665 1686 1721
/src/gui/widgets/seq_graphic/rendering_ctx.cpp 1003 1008 1009 1044 1045 1046
/src/gui/widgets/seq_graphic/seqgraphic_pane.cpp 2369 2390 2391 2391
/src/gui/widgets/seq_graphic/seqgraphic_pane.hpp 387
/src/gui/widgets/seq_graphic/simple_graphic_ds.cpp 202 221
/src/gui/widgets/seq_graphic/sparsealn_graphic_ds.cpp 144 147 153 156
/src/gui/widgets/seq_graphic/wx_export_vector_image_dlg.cpp 330 331 490 492
/src/gui/widgets/wx/advanced_file_input.cpp 203 204 206 211
/src/gui/widgets/wx/dock_container.cpp 775 778 778 787 787
/src/gui/widgets/wx/fileartprov.cpp 147 148 202 203 207 209
/src/gui/widgets/wx/image_grabber.cpp 84 88
/src/gui/widgets/wx/multi_file_input.cpp 184 186 214 218
/src/gui/widgets/wx/ui_tool_registry.cpp 172 173 177
/src/gui/widgets/wx/wx_save_pdf_base_dlg.cpp 305 307 363 364
/src/gui/widgets/wx/wx_utils.cpp 135 161 167 173 184 323 330
/src/gui/wx_demo/wx_main_frame.cpp 271 272
/src/misc/clog/ncbi_c_log.c 1610 1619 1620 1675 1761 1766 1767 1768 1781 1782 1783 1788 1789 1790 1796 1797 1798
/src/misc/discrepancy/discrepancy-tags.pl 9 10 11
/src/objects/seq/seq_loc_mapper_base.cpp 686 698 836 904
/src/objects/seqfeat/Prot_ref.cpp 122 130 131 133 163 170 172 179
/src/objmgr/handle_range_map.cpp 267 268 268
/src/objmgr/seq_loc_mapper.cpp 183 189
/src/objmgr/util/feature.cpp 3699 3718
/src/objtools/alnmgr/alnmap.cpp 401 411 413 414 434 436 437 505 507 507 509 509 515 517 517 519 519 528 531 543 562 563 576 577 600 604 613 613 623 623 647 649 651 653 655 665 680 683 690 710
/src/objtools/alnmgr/sparse_aln.cpp 352 355 375 380 386 391
/src/objtools/blast/gene_info_reader/file_utils.cpp 56 57
/src/objtools/lds2/lds2.cpp 932 933
/src/objtools/writers/fasta_writer.cpp 1056 1060
/src/sample/app/objmgr/file_db_engine.cpp 77 78 79 96 97 98 106 107 150 152 153 165 178 179 180 181
/src/serial/datatool/filecode.cpp 232 233
/src/serial/datatool/fileutil.cpp 66 67 243 245 247 247 249 253 253 257 259
/src/serial/datatool/fileutil.hpp 148
/src/serial/datatool/generate.cpp 667 670
/src/serial/datatool/generate.hpp 73 75 81 83 114 116 134
/src/serial/datatool/type.cpp 628 629 631 634
/src/sra/app/bam2graph/bam2graph.cpp 179 181 187 188 189 195 200 329 331 334 341 374
/src/sra/data_loaders/bam/test/test_bam_loader.cpp 107 112 117
/src/sra/data_loaders/csra/test/test_csra_loader.cpp 102 107 112
/src/sra/data_loaders/wgs/test/test_wgs_loader.cpp 783 786 786
/src/sra/readers/bam/bamread.cpp 348 350 351 2625 2626 2630
/src/sra/readers/bam/test/bam_test_common.cpp 157 158 159 165 166 174 178
/src/sra/readers/bam/test/bamgraph_test.cpp 161 162 165 176
/src/sra/readers/sra/csraread.cpp 398 399 400
/src/util/compress/api/archive.cpp 1085 1086
/src/util/compress/api/stream.cpp 177 181 193 195 203 206 225 227 235 237
/src/util/compress/api/streambuf.cpp 185 188 191 200 204 208 212 215 218 230 232 240 244 246 255 268 294 312
/src/util/compress/api/streambuf.hpp 72 97 99 102 109 113 117 122 125 152 155 161 166 168 175 177 188 190 196 198 200 211 213
/src/util/compress/api/tar.cpp 3600 3601 3604 3673 3674 3674 3675 3678 4194 4348 4349 4367 4605 4606
/src/util/compress/api/zlib.cpp 743 755 767
/src/util/compress/api/zlib_cloudflare.cpp 744 756 768
/src/util/file_obsolete.cpp 67 68 82
/src/util/regexp/pcregrep.c 582 586 595 597 696 700 700 701 708 708 709 712 713 717 723 727 729 729 734 736 736 737 745 747 748 793 794 2239 2241 2249 2265
/src/util/test/test_align.cpp 126 128 129
/src/util/test/test_tar.cpp 376 385
/src/util/util_misc.cpp 158 164 165 171 172

1412 references in 244 files.


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