Identifier search

Type the full name of an identifier to look for (a function name, variable name, typedef, etc).
Matches are case-sensitive. As a convenience,extra N line numbers denote case-insensitive occurrences..

Definitions for format

Type	Member of	File	Line
macro (un)definition		/include/corelib/ncbiexpt.hpp	672
enumeration name	bm::chrono_taker	/include/util/bitset/bmtimer.h	57
enumerator	Format	/src/algo/blast/gumbel_params/njn_ioutil.hpp	52
enumerator	Format	/src/algo/blast/gumbel_params/njn_matrix.hpp	115
function prototype or declaration		/src/algo/winmask/win_mask_config.cpp	285
function prototype or declaration		/src/app/blastdb/convert2blastmask.cpp	202
function prototype or declaration		/src/app/dustmasker/dust_mask_app.cpp	126
function prototype or declaration		/src/app/dustmasker/dust_mask_app.cpp	171
function prototype or declaration		/src/app/segmasker/segmasker.cpp	156
function prototype or declaration		/src/app/segmasker/segmasker.cpp	174
function prototype or declaration		/src/gui/framework/task_view.cpp	104

11 declarations in 9 files.

References to format

File	Line
/include/algo/align/util/tabular_fmt.hpp	80
/include/algo/blast/blastinput/blast_fasta_input.hpp	127 131 157
/include/algo/gnomon/gnomon.hpp	58
/include/algo/phy_tree/bio_tree_format_label.hpp	44 61 62
/include/algo/phy_tree/phytree_format/phytree_format.hpp	280
/include/cgi/cgiapp.hpp	307 598
/include/connect/ncbi_socket.h	1399
/include/connect/ncbi_socket.hpp	395
/include/connect/services/impl/netstorage_impl.hpp	395
/include/corelib/ncbi_cookies.hpp	160
/include/corelib/ncbiexpt.hpp	672 720 746
/include/corelib/ncbifile.hpp	1368
/include/corelib/ncbistr.hpp	1200 1715 5276 5279
/include/corelib/ncbitime.hpp	662 684 702 1406
/include/corelib/request_ctx.hpp	539 542
/include/corelib/test_boost.hpp	742 767
/include/ctools/asn_converter.hpp	69 71 87 89 101 110 116 124 129 139
/include/ctools/ctransition/ncbierr.hpp	75
/include/dbapi/driver/ftds100/freetds/cstypes.h	126
/include/dbapi/driver/ftds100/freetds/freetds/convert.h	93
/include/dbapi/driver/ftds14/freetds/cstypes.h	132
/include/dbapi/driver/ftds14/freetds/ctlib.h	346 360 372
/include/dbapi/driver/ftds14/freetds/freetds/convert.h	93
/include/dbapi/driver/impl/dbapi_driver_utils.hpp	112 151
/include/dbapi/driver/interfaces.hpp	133 138 175
/include/gui/core/file_load_option_panel.hpp	141
/include/gui/print/print_options.hpp	185 186
/include/gui/widgets/aln_multiple/alnmulti_widget.hpp	264 310
/include/gui/widgets/loaders/file_load_wizard.hpp	96
/include/gui/widgets/phylo_tree/phylo_tree_label.hpp	88 91
/include/gui/widgets/seq_graphic/seqgraphic_widget.hpp	399
/include/gui/widgets/wx/image_grabber.hpp	219
/include/objects/biotree/DistanceMatrix.hpp	78
/include/objects/general/Date.hpp	116 117 157 159
/include/objects/general/Date_std.hpp	77
/include/objects/seq/Delta_ext.hpp	79
/include/objects/seqfeat/Genetic_code_table.hpp	174
/include/objtools/align_format/aln_printer.hpp	89 89
/include/objtools/align_format/tabular.hpp	81 204 561 563
/include/objtools/flatfile/flatfile_parse_info.hpp	128
/include/objtools/flatfile/fta_parse_buf.h	50
/include/objtools/format/flat_file_config.hpp	395 428 428
/include/objtools/format/flat_file_generator.hpp	84
/include/objtools/format/gather_items.hpp	63
/include/objtools/format/item_formatter.hpp	79
/include/objtools/lds2/lds2_db.hpp	62 78 88 88
/include/objtools/readers/cigar.hpp	92
/include/objtools/readers/reader_base.hpp	123
/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp	65
/include/objtools/seqmasks_io/mask_writer_seqloc.hpp	61
/include/serial/delaybuf.hpp	92 95
/include/serial/impl/objistr.inl	45 47
/include/serial/impl/objostr.inl	45 48
/include/serial/objistr.hpp	118 133 148 161 170 181 193 206 1024 1060
/include/serial/objostr.hpp	108 126 144 161 771
/include/serial/rpcbase.hpp	70 71 75 77
/include/serial/rpcbase_impl.hpp	58 60 127
/include/serial/streamiter.hpp	1199 1274 1393 1409 1672 1688
/include/sra/readers/sra/exception.hpp	177
/include/util/bitset/bmtimer.h	57 150 158
/include/util/compress/archive.hpp	127 514 552 655 667
/include/util/compress/zlib/zlib.h	1468 1926
/include/util/compress/zlib_cloudflare/zlib_cf.h	1416 1825
/include/util/format_guess.hpp	166 208 266 266 340
/include/util/regexp/ctre/ctre-unicode.hpp	6161
/include/util/value_convert_policy.hpp	60
/src/algo/align/util/align_filter.cpp	888 889 890 893 896
/src/algo/align/util/tabular_fmt.cpp	3079 3085 3098 3109 3113 3122
/src/algo/blast/Makefile.in	7
/src/algo/blast/blastinput/blast_fasta_input.cpp	479 484 508 513 986 988 996
/src/algo/blast/gumbel_params/njn_ioutil.cpp	52 53 61 66 71
/src/algo/blast/gumbel_params/njn_ioutil.hpp	52
/src/algo/blast/gumbel_params/njn_matrix.cpp	44 45 50 55 60
/src/algo/blast/gumbel_params/njn_matrix.hpp	115
/src/algo/gnomon/hmm.cpp	708 710
/src/algo/ms/omssa/omssa2pepXML.cpp	124 150 153 156 162 164 166 170 182
/src/algo/phy_tree/bio_tree_format_label.cpp	39 41
/src/algo/phy_tree/phytree_format/phytree_format.cpp	229 231
/src/algo/winmask/win_mask_config.cpp	285 288 291 294 296 297 299 300 303 306 309
/src/app/agp_validate/AgpFastaComparator.cpp	770 773 786 787 793 823 835
/src/app/annotwriter/annotwriter.cpp	373 374 374
/src/app/asnval/thread_state.cpp	268 269 284 288 292
/src/app/biosample_chk/biosample_chk.cpp	1371 1399 1401 1402
/src/app/blast/cleanup-blastdb-volumes.py	69 70 113 117 126 131 132 133 137 139
/src/app/blast/get_species_taxids.sh	97
/src/app/blastdb/blastdbcmd.cpp	271 279 281 386 387 392 451 452 456 498 499 503
/src/app/blastdb/convert2blastmask.cpp	202 215
/src/app/discrepancy_report/asndisc.cpp	193 194 203 207 211
/src/app/dustmasker/dust_mask_app.cpp	126 129 133 136 139 143 145 146 148 149 152 155 158 171 173 178
/src/app/feat_import/feat_import.cpp	217 218 219 220 222
/src/app/flat2asn/flat2asn.cpp	129 134
/src/app/gap_stats/gap_stats.cpp	848 892 913 955 971 980
/src/app/grid/cgi2rcgi/cgi2rcgi.cpp	164
/src/app/grid/grid_cli/grid_cli.cpp	1456 1458 1459 1465
/src/app/grid/grid_cli/ns_cmd_impl.cpp	92 96 99 105 106 189 193 196 201 204 207
/src/app/grid/grid_cli/ns_cmds.cpp	348 352 355 1060 1065 1068
/src/app/id1_fetch/id1_fetch.cpp	612 614 616 618 650 652
/src/app/id1_fetch/id1_fetch_simple.cpp	197 202 204 206 208 209 232
/src/app/id2_fetch/id2_fetch_simple.cpp	607 610 613 616 630 637 791 794 797 800 827 832
/src/app/multireader/multireader.cpp	97 248 284 866 1274 1277 1278 1278 1282 1286 1287 1291 1295 1299 1303 1313 1313 1313 1317 1321 1322 1326 1330 1334 1338 1342 1346
/src/app/netschedule/test/crash_test.py	234
/src/app/netschedule/test/loader.py	194
/src/app/netschedule/test/multi_test_netschedule.py	333
/src/app/netstorage/nst_handler.cpp	3225 3226
/src/app/netstorage/test/test_netstorage_release.py	92
/src/app/pub_report/pub_report.cpp	164 165
/src/app/pubseq_gateway/client/processing.cpp	629 631 632 633
/src/app/pubseq_gateway/client/psg_client_app.cpp	406 408 409 410 411
/src/app/pubseq_gateway/client/psg_client_cgi.cpp	111 113 114 115 116
/src/app/pubseq_gateway/server/psgs_request.hpp	390 392
/src/app/pubseq_gateway/server/test/perf-diff.py	103 125 129
/src/app/pubseq_gateway/server/test/perf-one.py	94 102 105
/src/app/pubseq_gateway/server/test/psg_perf.py	247 299 302 319 361 374
/src/app/segmasker/segmasker.cpp	156 159 162 174 177 180 183 185 186 188 189 192 195 198
/src/app/split_cache/split_cache.cpp	621 625 634
/src/app/table2asn/multireader.cpp	727 733 756 763 767 770 791 805 808 967 972 973 975 989 1386 1389 1392 1397 1403
/src/app/table2asn/multireader.hpp	61 78 83
/src/app/table2asn/table2asn.cpp	1147 1153 1154 1260 1267 1272 1280 1281 1285 1304
/src/app/table2asn/table2asn.hpp	85 90
/src/app/tls/tls.cpp	129 131 139 141
/src/build-system/configure	6488
/src/cgi/cgiapp.cpp	1296 1323 1701 1703 1711 1713 1719 1721 2270 2276 2277 2280 2283 2286 2382 2389 2399 2409 2419
/src/connect/mbedtls/debug.c	55 70 71
/src/connect/mbedtls/debug_internal.h	32
/src/connect/mbedtls/ecp.c	693 698 699 706 732 742 878 882 883 894 3374 3378
/src/connect/mbedtls/mbedtls/debug.h	84 90
/src/connect/mbedtls/mbedtls/ecp.h	775 853 1429
/src/connect/mbedtls/mbedtls/platform.h	176 202 238 249 276 286
/src/connect/mbedtls/mps_trace.c	43 48 49
/src/connect/mbedtls/mps_trace.h	107
/src/connect/mbedtls/platform.c	89 93 101 105 144 148 157 161 174 176 197 200
/src/connect/ncbi_priv.h	251
/src/connect/ncbi_socket.c	7655 7666
/src/connect/ncbi_socket_cxx.cpp	403 407
/src/connect/services/netservice_api_impl.hpp	47
/src/connect/services/netservice_protocol_parser.cpp	201
/src/connect/services/netstorage_rpc.cpp	354 950 952
/src/corelib/ncbi_cookies.cpp	214 222
/src/corelib/ncbi_dbsvcmapper.cpp	112
/src/corelib/ncbi_pool_balancer.cpp	245
/src/corelib/ncbifile.cpp	1357 1360
/src/corelib/ncbistr.cpp	2335 2338 2341 2345 2348 2397 2400 2403 2407 2410 2851 2855 2869 2877 2884
/src/corelib/ncbitime.cpp	507 528 529 545 864 869 874 1512 1526 1531 1532 2480 2486 2487 2625 2631 2681 2688 2693 2694
/src/corelib/request_ctx.cpp	852 856 864 866
/src/corelib/test/test_ncbitime.cpp	462 502 503
/src/corelib/test/test_ncbitime_mt.cpp	217 255 256
/src/corelib/test_boost.cpp	207 226 257 665 667 731 748 806 1666 1675 1690
/src/ctools/ctransition/ct_ncbierr.cpp	72 77 78
/src/dbapi/driver/ctlib/bcp.cpp	178 194
/src/dbapi/driver/ctlib/result.cpp	121
/src/dbapi/driver/ctlib/rpc.cpp	151
/src/dbapi/driver/dbapi_driver_utils.cpp	136 306 319
/src/dbapi/driver/dbapi_impl_context.cpp	597
/src/dbapi/driver/ftds100/freetds/ctlib/blk.c	150 805
/src/dbapi/driver/ftds100/freetds/ctlib/cs.c	602 637 851
/src/dbapi/driver/ftds100/freetds/ctlib/ct.c	1577 1861 2464
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/array_bind.c	118 137 154
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/blk_in.c	188
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/blk_in2.c	47
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/blk_out.c	102 122 139
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/ct_cursor.c	167 365 488 598
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/ct_cursors.c	174 268
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/ct_diagall.c	119 138 146
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/ct_diagclient.c	117 136
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/ct_dynamic.c	261 302
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/datafmt.c	95
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/get_send_data.c	130
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/rpc_ct_param.c	371
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/rpc_ct_setparam.c	417
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/t0002.c	65 225
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/t0003.c	105
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/t0007.c	85 95 105 115
/src/dbapi/driver/ftds100/freetds/ctlib/unittests/t0009.c	129 145 161 226 255
/src/dbapi/driver/ftds100/freetds/tds/convert.c	2977 2986 3008 3012 3031 3033
/src/dbapi/driver/ftds14/freetds/ctlib/blk.c	162 827
/src/dbapi/driver/ftds14/freetds/ctlib/cs.c	613 654 930
/src/dbapi/driver/ftds14/freetds/ctlib/ct.c	1619 1913
/src/dbapi/driver/ftds14/freetds/ctlib/ct_checks.h	14
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/array_bind.c	118 137 154
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/blk_in.c	188
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/blk_in2.c	46
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/blk_out.c	99 119 136
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/ct_cursor.c	167 365 488 598
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/ct_cursors.c	174 268
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/ct_diagall.c	119 138 146
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/ct_diagclient.c	117 136
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/ct_dynamic.c	261 302
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/data.c	98
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/datafmt.c	95
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/get_send_data.c	130
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/rpc_ct_param.c	381
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/rpc_ct_setparam.c	414
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/t0002.c	65 225
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/t0003.c	102
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/t0007.c	82 92 102 112
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/t0009.c	129 145 161 226 255
/src/dbapi/driver/ftds14/freetds/ctlib/unittests/variant.c	135
/src/dbapi/driver/ftds14/freetds/tds/convert.c	3013 3023 3045 3049 3090 3093
/src/dbapi/driver/ftds14/freetds/tds/unittests/strftime.c	34 35 37 44
/src/dbapi/driver/public.cpp	129 131 132 152 159 192 197 199 207 210 214
/src/dbapi/lang_bind/python/python_ncbi_dbapi.cpp	4567 4569
/src/dbapi/variant.cpp	232
/src/gui/app/blastfmt/blast_hitmatrix.cpp	90 99
/src/gui/app/blastfmt/blast_hitmatrix.hpp	97
/src/gui/app/project_tools/gbproject_tool.cpp	208 226 240 764 767 769 771 775 780
/src/gui/core/exclusive_edit_dlg.cpp	120 121
/src/gui/core/file_load_option_panel.cpp	187 188 285 286 302 304 308 364 365
/src/gui/core/project_load_option_panel.cpp	153 154
/src/gui/core/project_service.cpp	131 138 164 171 329 330 332
/src/gui/core/project_tree_panel.cpp	101 102 113 114 128 129 149
/src/gui/core/test_table_reader/tabletest.sh	43 58
/src/gui/core/ui_file_load_manager.cpp	663 664 665 674 681 719 729
/src/gui/core/ws_auto_saver.cpp	205 206 207 318 319 320
/src/gui/framework/task_view.cpp	104 105
/src/gui/framework/workbench_frame.cpp	88 89 93
/src/gui/objutils/macro_fn_entry.cpp	1455 1457 1458
/src/gui/opengl/MTLTextureGlyph.cpp	85
/src/gui/packages/pkg_sequence_edit/submission_wizard.cpp	864 869 870 872 884
/src/gui/packages/pkg_sequence_edit/update_multi_seq_input.cpp	112 114 117 118
/src/gui/packages/pkg_sequence_edit/update_seq_input.cpp	292 294 297 298
/src/gui/print/print_options.cpp	436 438 444 446
/src/gui/widgets/aln_multiple/alnmulti_widget.cpp	1622 1667 1672 1692 1694
/src/gui/widgets/aln_multiple/wx_export_alnmulti_img_dlg.cpp	77 79
/src/gui/widgets/aln_multiple/wx_export_alnmulti_img_dlg.hpp	92
/src/gui/widgets/edit/macrofloweditor.cpp	1860 1861 1861 1865 1886
/src/gui/widgets/loaders/bam_load_option_panel.cpp	416 417
/src/gui/widgets/loaders/file_load_mru_list.cpp	43 53 61 68
/src/gui/widgets/loaders/file_load_panel.cpp	182 183 198 199 285 287 291 340 341 342
/src/gui/widgets/loaders/file_load_panel.hpp	123
/src/gui/widgets/loaders/file_load_wizard.cpp	156 158 243 244 251 252
/src/gui/widgets/loaders/gb_flatfile_object_loader.cpp	88
/src/gui/widgets/loaders/gb_load_option_panel.cpp	158 159 506 513 536 542
/src/gui/widgets/phylo_tree/phylo_tree_label.cpp	200 203 211 217
/src/gui/widgets/phylo_tree/phylo_tree_query_macro_fns.cpp	690 694 704 705
/src/gui/widgets/seq_graphic/seqgraphic_widget.cpp	1729 1767
/src/gui/widgets/seq_graphic/wx_export_vector_image_dlg.cpp	82 85
/src/gui/widgets/seq_graphic/wx_export_vector_image_dlg.hpp	92
/src/gui/widgets/wx/image_grabber.cpp	576 578
/src/misc/clog/ncbi_c_log.c	1051
/src/misc/discrepancy/discrepancy_stream.cpp	694 695 704 708 712
/src/objects/biotree/DistanceMatrix.cpp	103 104 136 139 142 179 181
/src/objects/general/Date.cpp	94 106
/src/objects/general/Date_std.cpp	159 173 178 181 191 197 209 211 211 235 238 253 292 294 294 303 313
/src/objects/general/unit_test/unit_test_field.cpp	56 59 61
/src/objects/seqfeat/Genetic_code_table.cpp	377 379
/src/objects/seqfeat/prepare_taxtable.sh	6 7
/src/objects/taxon1/unit_test/local_taxon_unit_test.cpp	53
/src/objects/taxon1/unit_test/taxon1_unit_test.cpp	53
/src/objmgr/util/objutil.cpp	1246 1251
/src/objtools/Makefile.in	10
/src/objtools/align_format/tabular.cpp	70 78 139 144
/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp	132 146
/src/objtools/asniotest/asniotest.cpp	564 565 569 583 584
/src/objtools/cleanup/test/test_basic_cleanup.cpp	499 501 504 531 533
/src/objtools/cleanup/test/test_cases/+create_template_expanded_files_and_cleanasns_output	92
/src/objtools/data_loaders/genbank/gicache/gicache.c	84
/src/objtools/data_loaders/genbank/processors.cpp	1857 1860 1863 1866 1897
/src/objtools/data_loaders/lds2/lds2_dataloader.cpp	313 323 613 623
/src/objtools/flatfile/add.cpp	190 205 258 267 270 1610 1626 1643 1651
/src/objtools/flatfile/add.h	45 48 57
/src/objtools/flatfile/asci_blk.cpp	545 569 1696 1716 1716 1717 1723
/src/objtools/flatfile/asci_blk.h	57
/src/objtools/flatfile/buf_data_loader.cpp	184 218 224 224 233 295 301 315 333 337 381 456 468
/src/objtools/flatfile/em_ascii.cpp	1019 2182
/src/objtools/flatfile/entry.cpp	281 382
/src/objtools/flatfile/ftamain.cpp	357 359 361 364 366 368 371 376 381 386 439 465 506 508 510 563 571 586 586 587 598 631 636 638 640 642 650 824 890 892 894 923 925 926 927 928 929 930 931 932
/src/objtools/flatfile/gb_ascii.cpp	382 1516
/src/objtools/flatfile/indx_blk.cpp	832 861 892 903 908 1997 2191
/src/objtools/flatfile/integration_test/flatfile_parser_integration_tests.cpp	54 56 96 98 136 138
/src/objtools/flatfile/keyword_parse.cpp	44 45
/src/objtools/flatfile/keyword_parse.hpp	50
/src/objtools/flatfile/loadfeat.cpp	584 596 1156 1176 1193 1197 1275 3131 3133 3135 3707 3718 3783 3880 4697 4700 4714 4725 4728 4763 4764 4795 4875 4876 5023 5023 5295 5392
/src/objtools/flatfile/loadfeat.h	65
/src/objtools/flatfile/ref.cpp	232 242 242 244 395 411 433 434 494 719 721 723 775 777 779 971 992 1517 2438 2440 2442 2444
/src/objtools/flatfile/sp_ascii.cpp	4790
/src/objtools/flatfile/utilref.cpp	127 140 177 194 194 203 212 212 227 253 259 287
/src/objtools/flatfile/utilref.h	62 63 64
/src/objtools/flatfile/xm_ascii.cpp	1258
/src/objtools/format/flat_file_config.cpp	312 319 703 704 706 708 710 712 714 716 719 719 1062 1085
/src/objtools/format/flat_file_generator.cpp	83 90 481 482 489 878 879 1043
/src/objtools/format/gather_items.cpp	178 180
/src/objtools/format/item_formatter.cpp	81 83
/src/objtools/import/feat_importer.cpp	58 64 67 70 73
/src/objtools/import/unit_test/unit_test_import.cpp	102 117
/src/objtools/lds2/lds2.cpp	77 540 554 1001 1003 1035 1085 1091
/src/objtools/lds2/lds2_db.cpp	487 787 809
/src/objtools/lds2/lds2_handlers.cpp	54
/src/objtools/readers/aln_errors.cpp	99 103 104
/src/objtools/readers/aln_errors.hpp	42
/src/objtools/readers/aln_reader.cpp	67 72
/src/objtools/readers/alnread.cpp	54 57 94 96
/src/objtools/readers/bed_autosql.cpp	66 72 74 102 103 104 107
/src/objtools/readers/bed_autosql_custom.cpp	63 66 70 71 73
/src/objtools/readers/bed_autosql_custom.hpp	51
/src/objtools/readers/cigar.cpp	48 54 59 65 75
/src/objtools/readers/fasta.cpp	1368 1376 1444 1458 1504
/src/objtools/readers/reader_base.cpp	118 123
/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp	47 58 60 62 64 67
/src/objtools/seqmasks_io/mask_writer_seqloc.cpp	42 45 47 49 52
/src/objtools/test/objmgr/test_feat_tree.cpp	197 199 202 205 210 217 220 223 226 231 236 248 249 249 317 322 324
/src/objtools/validator/test/test_validator.cpp	431 433 436
/src/objtools/validator/unit_test/unit_test_validator.cpp	584 595 679 698 729 750 760 774 823 827 12934 12935 12945 13982 13991 14025 24621 24622
/src/serial/asntypes.cpp	661 662 664 670 784 785 787 793
/src/serial/datatool/rpcgen.cpp	256 264 265
/src/serial/delaybuf.cpp	96 99
/src/serial/objistr.cpp	88 96 102 144 146 162 165 170 173 178 182 187 192 195 200 203 207 208 458 460
/src/serial/objostr.cpp	84 95 101 122 126 131 147 153 299 303
/src/serial/rpcbase.cpp	113 114 125 127 389 391
/src/sra/readers/bam/bamindex.cpp	47
/src/sra/readers/bam/bamread.cpp	64
/src/sra/readers/bam/vdbfile.cpp	43
/src/util/compress/api/archive.cpp	211 212 218 223 1119 1120 1150 1151 1261 1262 1273 1274
/src/util/compress/zlib/gzwrite.c	391 429 433 437 440 463 468 469 477 480 523 529 534 538
/src/util/compress/zlib_cloudflare/gzwrite.c	312 349 353 357 360 383 387 388 396 399 442 448 453 457
/src/util/creaders/alnread.c	328 342 349 6055 6068
/src/util/format_guess.cpp	290 292 296 434 437 495 497 502 505 509 513 516 520 603
/src/util/test/test_compress_archive.cpp	57 204 209 258 271 287 347 356 431 445
/src/util/test/test_tar.sh	243 269

1340 references in 318 files.