Identifier search

Type the full name of an identifier to look for (a function name, variable name, typedef, etc).
Matches are case-sensitive. As a convenience,extra N line numbers denote case-insensitive occurrences..

Definitions for handle

Type	Member of	File	Line
function prototype or declaration	CSurveyBrowser	/include/gui/widgets/snp/survey_browser.hpp	51
function prototype or declaration	lmdb::env::lmdb	/include/objtools/blast/seqdb_reader/impl/lmdb++.h	1179
function prototype or declaration	lmdb::env::lmdb	/include/objtools/blast/seqdb_reader/impl/lmdb++.h	1190
function prototype or declaration	lmdb::env::lmdb	/include/objtools/blast/seqdb_reader/impl/lmdb++.h	1206
function prototype or declaration	lmdb::env::lmdb	/include/objtools/blast/seqdb_reader/impl/lmdb++.h	1217
function prototype or declaration	lmdb::env::lmdb	/include/objtools/blast/seqdb_reader/impl/lmdb++.h	1226
function prototype or declaration	lmdb::env::lmdb	/include/objtools/blast/seqdb_reader/impl/lmdb++.h	1235
function prototype or declaration	lmdb::env::lmdb	/include/objtools/blast/seqdb_reader/impl/lmdb++.h	1244
function prototype or declaration	lmdb::env::lmdb	/include/util/lmdbxx/lmdb++.h	1309
function prototype or declaration	lmdb::env::lmdb	/include/util/lmdbxx/lmdb++.h	1320
function prototype or declaration	lmdb::env::lmdb	/include/util/lmdbxx/lmdb++.h	1336
function prototype or declaration	lmdb::env::lmdb	/include/util/lmdbxx/lmdb++.h	1347
function prototype or declaration	lmdb::env::lmdb	/include/util/lmdbxx/lmdb++.h	1356
function prototype or declaration	lmdb::env::lmdb	/include/util/lmdbxx/lmdb++.h	1365
function prototype or declaration	lmdb::env::lmdb	/include/util/lmdbxx/lmdb++.h	1374
function prototype or declaration		/include/util/thread_pool_old.hpp	724
function prototype or declaration		/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp	1797
function prototype or declaration		/src/connect/server.cpp	131
function prototype or declaration		/src/connect/server.cpp	145
function prototype or declaration		/src/objtools/pubseq_gateway/cache/psg_cache_blob_prop.cpp	134
macro (un)definition		/src/util/lmdb/mdb.c	383

21 declarations in 8 files.

References to handle

File	Line
/compilers/vs2019/dll/dll_main.cpp	8
/compilers/vs2022/dll/dll_main.cpp	8
/include/algo/phy_tree/phytree_format/phytree_format.hpp	452
/include/algo/sequence/make_cdr_prods.hpp	51
/include/algo/structure/cd_utils/cuCdUpdater.hpp	180 181 182
/include/common/test_assert_impl.h	74
/include/connect/impl/ncbi_uv_nghttp2.hpp	120 122 137 161 208 210 211 214 214 218 218
/include/connect/impl/thread_pool_for_server.hpp	180
/include/connect/ncbi_connector.h	269
/include/connect/ncbi_pipe.hpp	261
/include/connect/ncbi_socket.h	777 799 920
/include/connect/ncbi_socket.hpp	734 1211 1214
/include/corelib/interprocess_lock.hpp	187
/include/corelib/ncbi_process.hpp	81 792
/include/corelib/ncbiexec.hpp	142 491
/include/corelib/ncbifile.hpp	115 116 2529 3530 3641 3674 3710 3830
/include/corelib/ncbimtx.hpp	134 707
/include/corelib/ncbithr_conf.hpp	75
/include/db/sqlite/sqlitewrapp.hpp	132 326 329 338 863 865 869
/include/dbapi/driver/ftds100/freetds/ctlib.h	288
/include/dbapi/driver/ftds100/freetds/freetds/odbc.h	122 123 124 125 126 127 129 130 131 132 134 135 136 137
/include/dbapi/driver/ftds100/freetds/freetds/thread.h	167 180 194
/include/dbapi/driver/ftds14/freetds/ctlib.h	418
/include/dbapi/driver/ftds14/freetds/freetds/odbc.h	123 124 125 126 127 128 130 131 132 133 135 136 137 138
/include/dbapi/driver/ftds14/freetds/freetds/thread.h	184 197 212
/include/dbapi/driver/odbc/unix_odbc/sqlucode.h	129 138 469 478
/include/gui/objutils/alignment_smear.hpp	71
/include/gui/objutils/density_map.hpp	234 251 255 259 302 370 374 523 533 534 551 558 615 622 627 629 675 733 741 746 747
/include/gui/objutils/descriptor_change.hpp	69 133 154 169
/include/gui/objutils/gencoll_svc.hpp	76 94
/include/gui/objutils/gi_cache.hpp	64
/include/gui/objutils/gui_object_info_seq_feat.hpp	95
/include/gui/objutils/link_utils.hpp	69 89
/include/gui/objutils/utils.hpp	273 339 403 471
/include/gui/objutils/visible_range.hpp	70 115
/include/gui/packages/pkg_sequence/table_data_vcf.hpp	89
/include/gui/packages/pkg_snp/track/snp_ds.hpp	96
/include/gui/widgets/aln_crossaln/cross_panel_ir.hpp	96
/include/gui/widgets/aln_multiple/align_ds.hpp	79
/include/gui/widgets/aln_multiple/align_row.hpp	87
/include/gui/widgets/aln_multiple/alnmulti_ds.hpp	152 153
/include/gui/widgets/aln_multiple/alnmulti_ds_builder.hpp	77
/include/gui/widgets/aln_multiple/alnvec_multi_ds.hpp	60
/include/gui/widgets/aln_multiple/feature_graph.hpp	113
/include/gui/widgets/aln_multiple/trace_data.hpp	52
/include/gui/widgets/aln_multiple/trace_graph.hpp	91
/include/gui/widgets/hit_matrix/align_seq_table.hpp	76 77 78
/include/gui/widgets/hit_matrix/density_map_ds.hpp	54
/include/gui/widgets/hit_matrix/hit_matrix_ds_builder.hpp	65
/include/gui/widgets/hit_matrix/seq_graph.hpp	57
/include/gui/widgets/seq/text_fasta_ds.hpp	48
/include/gui/widgets/seq/text_panel.hpp	84 85
/include/gui/widgets/seq_graphic/alignment_job.hpp	62 71 80 86 93 108 116 235
/include/gui/widgets/seq_graphic/alignment_smear_glyph.hpp	54 58
/include/gui/widgets/seq_graphic/segment_smear_glyph.hpp	59 60
/include/gui/widgets/seq_graphic/seqgraphic_graph_ds.hpp	113 119 128 132
/include/gui/widgets/seq_graphic/seqgraphic_job.hpp	142
/include/gui/widgets/seq_graphic/seqgraphic_utils.hpp	61 64 67 70 74 75 79
/include/gui/widgets/seq_text/seq_text_ds.hpp	126
/include/gui/widgets/snp/survey_browser.hpp	51
/include/objects/seq/seq_id_handle.hpp	193 195 195 197 199 199 201 206 207
/include/objects/seq/seq_id_mapper.hpp	106
/include/objmgr/annot_selector.hpp	776 778
/include/objmgr/bioseq_set_handle.hpp	206 212 215 224 569 571 576 578 583 585
/include/objmgr/edit_saver.hpp	116 118 120 122 124 126 199 202 208 210 212 215 217 219 222 224 226 230
/include/objmgr/edits_db_saver.hpp	149 152 156 158 160 163 165 167 170 172 174
/include/objmgr/impl/bioseq_edit_commands.hpp	67 84 87 89 92 96 98 100 102 107 110 112 115 118 120 122 124 133 135 197 199 201 203 215 216 217 218 219 220 221 222 235 237 239 241 258 259 260 261 262 263 264 265 294 295 296 297 298 299 300 301 331 332 336 337 341 342
/include/objmgr/impl/bioseq_set_edit_commands.hpp	66 68 70 72 84 85 86 87 88 89 90 91 120 121 122 123 124 125 126 127 155 156 160 161 165 166 185 189
/include/objmgr/impl/data_source.hpp	438
/include/objmgr/impl/edit_commands_impl.hpp	92 94 135 136 137 138 155 158 159 162 165 166 200 201 203 204 206 207 208 209 215 217 220 221 224 226 240 241 289 290 336 337 377 380 382 385 392 394 395 397 399 401 404 406 413 414 415 416 418 420 422 424 437 438 486 489 493 497 506 508
/include/objmgr/impl/seq_annot_edit_commands.hpp	58 60 64 66 70 71 75 76 96 97 104 105 112 113 124 126 127 184 186 237 238
/include/objmgr/impl/seq_entry_edit_commands.hpp	64 66 75 77 90 93 141 162 164 185 187 206 210 211 212 213 217 220 221 222 223 227 231 232 233 234 242 247 248 249 250 253 257 258 259 260 276 279
/include/objmgr/prefetch_actions.hpp	173 174 209
/include/objmgr/seq_annot_handle.hpp	248 249 250 339 341 346 348 353 355
/include/objmgr/seq_descr_ci.hpp	73 79
/include/objmgr/seq_entry_handle.hpp	210 216 219 653 655 660 662 667 669
/include/objmgr/seqdesc_ci.hpp	79 94 149
/include/objmgr/unsupp_editsaver.hpp	153 156 161 163 165 168 170 172 175 177 179 183
/include/objmgr/util/create_defline.hpp	142
/include/objmgr/util/sequence.hpp	184 672 676 681 689 697 815 817 820 823 841 842 902 1082
/include/objmgr/util/weight.hpp	68 88
/include/objtools/align_format/align_format_util.hpp	912 1494 1505 1525
/include/objtools/align_format/showdefline.hpp	398 600
/include/objtools/align_format/tabular.hpp	304 305
/include/objtools/alnmgr/aln_seqid.hpp	138
/include/objtools/blast/seqdb_reader/impl/lmdb++.h	1109 1110 1112 1116 1119 1123 1131 1132 1168 1179 1189 1190 1206 1217 1226 1235 1244 1280 1281 1283 1285 1293 1294 1333 1341 1415 1416 1417 1425 1426 1464 1476 1488 1509 1521 1536 1551 1568 1589 1609 1626 1645 1664 1682 1694 1708 1742 1743 1745 1747 1755 1756 1792 1816 1823 1830 1868 1882
/include/objtools/blast/seqdb_reader/seqdb.hpp	673
/include/objtools/data_loaders/genbank/gbnative.hpp	188
/include/objtools/snputil/snp_bins.hpp	197
/include/objtools/writers/agp_write.hpp	67 78 106 120
/include/objtools/writers/fasta_writer.hpp	204 228
/include/util/lmdbxx/lmdb++.h	1239 1240 1242 1246 1249 1253 1261 1262 1298 1309 1319 1320 1336 1347 1356 1365 1374 1410 1411 1413 1415 1423 1424 1463 1471 1545 1546 1547 1555 1556 1604 1616 1628 1649 1661 1676 1691 1708 1728 1747 1764 1783 1802 1820 1832 1846 1880 1881 1883 1885 1893 1894 1930 1954 1961 1968 2006 2020
/include/util/thread_pool_old.hpp	222 225 342 466 469 470 598 599 724 725 731 792 810 811 818 819 820 833 836 837 843 846 848 849 850 856 858 865 868 880 966 972 982 984 989 998 1043 1045 1165 1176 1195 1217 1221 1226
/src/algo/blast/format/blast_format.cpp	826 829 830 831 836
/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp	1797 1798 1799 1800 1804 1819 1820 1821 1822 1824 2406 2407 2408 2409 2410 2411 2412 2414
/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp	196 198 201 205 207 211 215 217 220 224 226 230 234 236 238 242 243 246 248 252 254 258 262 264 271 275 277 298 300 304 308 310 314 318 320 324 328 330 334 338 340 345
/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp	125 129 133 135
/src/algo/cobalt/unit_test/cobalt_unit_test.cpp	407 408
/src/algo/cobalt/unit_test/kmer_unit_test.cpp	92 95
/src/algo/phy_tree/phytree_format/phytree_format.cpp	842 849 859
/src/algo/seqqa/demo/demo_seqtest.cpp	117
/src/algo/seqqa/prot_prod_tests.cpp	63 65
/src/algo/seqqa/seq_id_tests.cpp	64 69
/src/algo/seqqa/xcript_tests.cpp	72 73 73
/src/algo/sequence/feature_generator.hpp	199 224 261
/src/algo/sequence/gene_model.cpp	152 154 155 402 403 406 434 436 1144 1145 1147 1764 1765 1766 1813 1830 1837 1838 2097 2100 2101 2103 2112 2560 2561 2675 2684
/src/algo/sequence/make_cdr_prods.cpp	59 81
/src/algo/sequence/transform_align.cpp	1104 1105 1106
/src/algo/sequence/unit_test/unit_test_polya.cpp	96 97
/src/algo/sequence/util.cpp	53 54 62 80 91 117 141 163 164
/src/algo/structure/cd_utils/cuCdUpdater.cpp	1099 1100 1104 1613 1616 1618
/src/app/asn2fasta/asn2fasta.cpp	121
/src/app/cn3d/cdd_annot_dialog.cpp	188 190
/src/app/cn3d/cdd_annot_dialog.hpp	65
/src/app/cn3d/cdd_book_ref_dialog.cpp	110 113
/src/app/cn3d/cdd_book_ref_dialog.hpp	56
/src/app/cn3d/cdd_ibis_annot_dialog.cpp	594 596
/src/app/cn3d/cdd_ibis_annot_dialog.hpp	197
/src/app/cn3d/cdd_ref_dialog.cpp	96 99
/src/app/cn3d/cdd_ref_dialog.hpp	56
/src/app/cn3d/cdd_splash_dialog.cpp	110 275 275 275
/src/app/cn3d/cdd_splash_dialog.hpp	62
/src/app/cn3d/taxonomy_tree.cpp	74 79 105 114 114 182 307 308 308 314
/src/app/grid/remote_app/exec_helpers.cpp	57 57
/src/app/id1_fetch/id1_fetch.cpp	109 582 588 589 592 605 606 621 627 629 632 815 824 827
/src/app/netcache/nc_db_info.hpp	315
/src/app/objmgr/demo/objmgr_demo.cpp	1317 1320 1324 1337 1338 1340 1340 1343 1344 1348 1351 1353 1360 1362 1367 1369 1394 1394 1440 1470 1471 1476 1484 1503 1507 1514 1524 1676 1686 1697 1704 1715 1722 1729 1797 1798 1807 1808 1885 1891 2095 2096 2099 2102 2137 2140 2323 2328 2335 2512 2689 2690 2699 2702 2711 2986 3005 3006 3044 3048 3050 3138 3144 3151 3170 3172 3182 3195 3199 3200 3204 3205 3209 3218 3229 3237 3243 3244 3245 3246 3254 3255 3259
/src/app/objmgr/split_demo/split_loader_demo.cpp	121 123 128 134 139
/src/app/pubseq_gateway/server/UvHelper.hpp	93 94 94 95 135 192 193 196 199 201 202 204 208 269
/src/app/pubseq_gateway/server/http_connection.cpp	133 135
/src/app/pubseq_gateway/server/psgs_dispatcher.cpp	47 50 55 58
/src/app/pubseq_gateway/server/psgs_dispatcher.hpp	46 47
/src/app/pubseq_gateway/server/psgs_io_callbacks.cpp	41 43 47 49 53 55 62 64
/src/app/pubseq_gateway/server/psgs_uv_loop_binder.cpp	44 46 50 52
/src/app/pubseq_gateway/server/tcp_daemon.cpp	140 143 171 381 386 390 437 453 462 465 479 484 488 491 492
/src/app/pubseq_gateway/server/tcp_daemon.hpp	87 153 159 161 162 164 165
/src/app/pubseq_gateway/server/uv_extra.c	87 89 162 171 173 304 307 315 318 320 323 341 344 347 360 395 409
/src/app/pubseq_gateway/server/uv_extra.h	43 47
/src/app/read_blast_result/read_blast_result_lib.cpp	140 141 142
/src/app/split_cache/split_cache.cpp	1262 1263 1264 1266 1295 1305 1323 1337 1358
/src/build-system/cmake/dll_main.cpp	8
/src/connect/ext/ncbi_dblb_svcmapper.cpp	454 457 461 467 467
/src/connect/mbedtls/psa/crypto_compat.h	41 43 107 147
/src/connect/mbedtls/psa/crypto_extra.h	1105
/src/connect/mbedtls/psa/crypto_struct.h	72 97 133 161 204 426 464
/src/connect/mbedtls/psa_crypto_slot_management.c	546 555 563 569 574 579 590
/src/connect/mbedtls/x509_crt.c	1534
/src/connect/ncbi_conn_stream.cpp	1148
/src/connect/ncbi_connection.c	89 90 91 1232
/src/connect/ncbi_file_connector.c	110 136 210 230 247 266 289 330 331 389
/src/connect/ncbi_ftp_connector.c	1964 1973 2032 2076 2166 2186 2245 2264 2317 2337 2338 2437
/src/connect/ncbi_http_connector.c	2456 2464 2474 2529 2625 2660 2680 2690 2713 2733 2734 2951
/src/connect/ncbi_memory_connector.c	104 117 142 165 181 200 227 228 267
/src/connect/ncbi_namedpipe.cpp	188 238
/src/connect/ncbi_namedpipe_connector.cpp	75 85 97 110 124 134 143 170 171 206
/src/connect/ncbi_pipe.cpp	194 196 207 262 277 279 285 286 287 290 337 338 339 395 399 455 601 603 647 829 846 956 1496 1498 1974 1977 1978 1980 1981
/src/connect/ncbi_pipe_connector.cpp	77 117 130 150 164 174 184 212 213 258
/src/connect/ncbi_service_connector.c	1051 1078 1085 1092 1234 1246 1261 1262 1305
/src/connect/ncbi_socket.c	1680 2426 2442 4751 4782 4787 4788 4795 4824 6306 6571 6578 6583 6584 6590 6594 6609 6612 6700 6708 6714 6725 6730 6734 6890 6896 6899 7707 7714 7720 7721 7727 7731 7745 7748 7868
/src/connect/ncbi_socket_connector.c	139 146 155 193 207 221 232 243 277 278 354
/src/connect/ncbi_socketp.h	69 367
/src/connect/ncbi_uv_nghttp2.cpp	70 88 109 185 187
/src/connect/server.cpp	131 132 133 145 149 150 187 190 192 196 203 232 234
/src/connect/test/test_assert_impl.h	74
/src/connect/test/test_ncbi_pipe.cpp	270 475 476 485 501 502 511 523 524 533
/src/connect/test/test_ncbi_trigger.cpp	316 318 320
/src/corelib/interprocess_lock.cpp	55 258 260 286 288 295 306 312
/src/corelib/ncbi_os_mswin.cpp	227 272 274 305 379 430 496 534
/src/corelib/ncbi_os_mswin_p.hpp	100 163
/src/corelib/ncbi_process.cpp	571 574 616 694 695 725 866 1067 1135 1142 1145 1253 1397 1404 1407 1429 1432 1456
/src/corelib/ncbi_stack_win32.cpp	94 97 100 138 139 146 156 159 184 188 193 198 203 293 322 388 454 455 521
/src/corelib/ncbi_stack_win64.cpp	77 81 86 91 96 186 210 276 329 330 398
/src/corelib/ncbi_system.cpp	951 1361
/src/corelib/ncbiapp.cpp	1456 1468
/src/corelib/ncbiargs.cpp	1998 2077 2087
/src/corelib/ncbidiag.cpp	6643 6646 6647 6648 6651 6653 6656
/src/corelib/ncbidll.cpp	72 74 168 173 175 178 182 182 195 198 223 226 228 233
/src/corelib/ncbiexec.cpp	69 78 500 697 699 717 718 722 722
/src/corelib/ncbifile.cpp	1845 1849 1850 1854 1928 2066 2327 3155 3888 3890 3891 3904 3906 3970 3972 3973 3979 3981 4883 4885 4886 4901 4902 5483 5601 5635 5643 5652 5909 5912 6761 6769 6954 6956 6964 6967 6969 6972 7028 7030 7041 7044 7046 7049 7113 7115 7260 7262
/src/corelib/ncbimtx.cpp	119 125 452 454 459 471 487 521 522 536 541 547 548 551 749 752 757 914 1122 1252 1364 1458 1680
/src/corelib/ncbithr.cpp	769
/src/corelib/test/test_interprocess_lock.cpp	162 184 187 214 217 238 241
/src/corelib/test/test_ncbi_process.cpp	71 74 75 76 85 86 87
/src/corelib/test/test_ncbiexec.cpp	119 215 216 217 218 219 220 221 222 245 246
/src/corelib/test/test_ncbithr.cpp	724 1249 1276 1276
/src/corelib/test_mt.cpp	217
/src/ctools/ctransition/ct_ncbimem.cpp	539 578 580 626 664 768
/src/db/sqlite/sqlitewrapp.cpp	54 55 55 66 69 83 85 157 176 178 180 190 193 415 417 419 429 432 437 439 446 467 469 500 502 510 511 512 513 516 522 525 533 536 539 542 545 553 556 559 567 570 573
/src/dbapi/driver/ftds100/freetds/ctlib/cs.c	503 783 787 788 859 862 863 864 874 877 878 889 892 893 902 905 906 918 918
/src/dbapi/driver/ftds100/freetds/odbc/error.c	500 516 516 519 522 527 532 535 575 578 581 584 589 593 599 616 616 621 627 632 636 643 679
/src/dbapi/driver/ftds100/freetds/odbc/error_export.h	6 14 22 28 38 46 53 60 134 143 152 159 170 179 187 195
/src/dbapi/driver/ftds100/freetds/odbc/odbc.c	4719 4725 4729 4731
/src/dbapi/driver/ftds100/freetds/odbc/unittests/common.c	191 199 202 205 213 222 235 573 604
/src/dbapi/driver/ftds100/freetds/odbc/unittests/common.h	78 81 82
/src/dbapi/driver/ftds100/freetds/odbc/unittests/long_error.c	17 53 65
/src/dbapi/driver/ftds100/freetds/replacements/ptw32_MCS_lock.c	117 117 119 136
/src/dbapi/driver/ftds14/freetds/ctlib/cs.c	492 506 580 585 586 842 846 847 938 941 942 943 953 956 957 967 970 971 979 982 983 995 995
/src/dbapi/driver/ftds14/freetds/odbc/error.c	502 518 518 521 524 529 534 537 577 580 583 586 591 595 601 618 618 623 629 634 638 645 681
/src/dbapi/driver/ftds14/freetds/odbc/error_export.h	6 14 22 28 38 46 53 60 134 143 152 159 170 179 187 195
/src/dbapi/driver/ftds14/freetds/odbc/odbc.c	4890 4896 4900 4902
/src/dbapi/driver/ftds14/freetds/odbc/unittests/cancel.c	72 89
/src/dbapi/driver/ftds14/freetds/odbc/unittests/common.c	192 200 203 206 214 223 236 585 620
/src/dbapi/driver/ftds14/freetds/odbc/unittests/common.h	81 84 85
/src/dbapi/driver/ftds14/freetds/odbc/unittests/long_error.c	17 51 63
/src/dbapi/driver/ftds14/freetds/utils/ptw32_MCS_lock.c	117 117 119 136
/src/dbapi/driver/ncbi_win_hook.cpp	85 125 131 164 168 172 176 180 200 201 202 203 299 303 333 338 472 480 796 798 926 1000 1103 1133 1138 1143 1148 1157 2202 2220
/src/dbapi/driver/ncbi_win_hook.hpp	204 209
/src/gui/core/app_dialogs.cpp	250 256 259 262 265 265 267 267 271 272 273 275 279 304
/src/gui/core/asn_export_job.cpp	74 76 78 80 81
/src/gui/core/project_service.cpp	360 363 366
/src/gui/objects/PluginValue.cpp	129 130 132
/src/gui/objutils/alignment_smear.cpp	63 69
/src/gui/objutils/attached_handles.cpp	389 391 396
/src/gui/objutils/basic_converters.cpp	1077 1078 1079 1103 1104 1105 1279 1280 1283 1285 1303 1304 1306 1325 1326 1328
/src/gui/objutils/gencoll_svc.cpp	175 180 182 182 190 195 209 218 224
/src/gui/objutils/gi_cache.cpp	54 58 59
/src/gui/objutils/gui_object_info_seq_feat.cpp	846 853
/src/gui/objutils/gui_object_info_seq_id.cpp	113 116 119 120 122
/src/gui/objutils/gui_object_info_seq_loc.cpp	110 111 112 114
/src/gui/objutils/link_utils.cpp	203 215 222 659 670 677
/src/gui/objutils/na_utils.cpp	94 95 97
/src/gui/objutils/object_index.cpp	98 99 102
/src/gui/objutils/sparse_alignment.cpp	288 294 325 331
/src/gui/objutils/test/test_density_map.cpp	101 115 117 128 141 152 155
/src/gui/objutils/test/test_fingerprints.cpp	102 103 115 139
/src/gui/objutils/test/test_getalignments.cpp	106 107 114 115
/src/gui/objutils/util_cmds.cpp	72 73
/src/gui/objutils/utils.cpp	605 607 608 613 620 645 662 668 671 1111 1116 1477 1479 1773 1777 1803 1903 1906 2358 2364 2436 2437 2463 2464
/src/gui/objutils/visible_range.cpp	85 92 93 122 131 135 201 202 203
/src/gui/packages/pkg_alignment/align_tab_export_job.cpp	57 68 71 73 83 86 88 165 180 236 269 293 342 357 362 363
/src/gui/packages/pkg_alignment/blast_seq_tool_job.cpp	238 239 242 246 257 286 287 290 293 304
/src/gui/packages/pkg_alignment/blast_tool_manager.cpp	321 322 513 514 516
/src/gui/packages/pkg_alignment/create_needleman_wunsch_tool_manager.cpp	232 248
/src/gui/packages/pkg_alignment/msa_tool_job.cpp	125 129 132 134
/src/gui/packages/pkg_alignment/ngalign_panel.cpp	168 169 170
/src/gui/packages/pkg_alignment/phy_tree_view.cpp	1382 1384
/src/gui/packages/pkg_alignment/splign_panel.cpp	95 97 99 104
/src/gui/packages/pkg_alignment/splign_tool.cpp	140 143
/src/gui/packages/pkg_sequence/agp_export_job.cpp	57 86
/src/gui/packages/pkg_sequence/component_search_tool.cpp	390 398 402
/src/gui/packages/pkg_sequence/cpg_search_tool.cpp	555
/src/gui/packages/pkg_sequence/fasta_export_job.cpp	97 98 104 105
/src/gui/packages/pkg_sequence/orf_search_tool.cpp	641 645 698
/src/gui/packages/pkg_sequence/table_data_vcf.cpp	66 96 101 205 210
/src/gui/packages/pkg_sequence/vcf_table_view.cpp	260 262 268 270 273 276 285 336
/src/gui/packages/pkg_sequence/view_graphic.cpp	163 165 171 173 176 179 189 411 412 414
/src/gui/packages/pkg_sequence/windowmasker_tool.cpp	343 349
/src/gui/packages/pkg_sequence_edit/apply_indexer_comments.cpp	343 345 352
/src/gui/packages/pkg_sequence_edit/discrepancy_dlg.cpp	1598 1599 1614 1615
/src/gui/packages/pkg_sequence_edit/editing_action_features.cpp	617 619 622 624 626 628
/src/gui/packages/pkg_snp/bins/bins_ds.cpp	81 83 333 341
/src/gui/packages/pkg_snp/hapmap/hapmap_ds.cpp	71 73 206 213
/src/gui/packages/pkg_snp/ld/ld_ds.cpp	79 80 210 217
/src/gui/packages/pkg_snp/track/snp_ds.cpp	53 55 355 365
/src/gui/utils/muparser/muParserDLL.cpp	118
/src/gui/utils/thread_pool_engine.cpp	164 165 166 197 198
/src/gui/widgets/aln_crossaln/cross_panel_ir.cpp	426 431
/src/gui/widgets/aln_crossaln/demo/cross_aln_demo_dlg.cpp	231 232 235
/src/gui/widgets/aln_multiple/align_ds.cpp	138 143
/src/gui/widgets/aln_multiple/align_row.cpp	104 105 649 651 655 663 668
/src/gui/widgets/aln_multiple/alnmulti_ds_builder.cpp	112 119
/src/gui/widgets/aln_multiple/alnmulti_model.cpp	118 120 123 637 638 828 829
/src/gui/widgets/aln_multiple/alnvec_multi_ds.cpp	259 265 640 641
/src/gui/widgets/aln_multiple/demo/align_multiple_demo_dlg.cpp	280 281 282
/src/gui/widgets/aln_multiple/feature_graph.cpp	65 73 498 499 503
/src/gui/widgets/aln_multiple/trace_data.cpp	51 52
/src/gui/widgets/aln_multiple/trace_graph.cpp	74 75
/src/gui/widgets/aln_table/alnspan_vertmodel.cpp	237 241 243
/src/gui/widgets/aln_table/annot_compare_ds.cpp	567 568
/src/gui/widgets/aln_table/demo/demo_align_table_frame.cpp	192 193 207
/src/gui/widgets/edit/cds_translation_panel.cpp	319 320
/src/gui/widgets/edit/edit_obj_view_dlg.cpp	722 723
/src/gui/widgets/edit/locationl_list_ctrl.cpp	996 997 1008 1009 1017 1018
/src/gui/widgets/edit/rna_panel.cpp	284 285
/src/gui/widgets/hit_matrix/align_seq_table.cpp	60 66 67 68 77 79 79 83 87 96 98 98
/src/gui/widgets/hit_matrix/demo/hit_matrix_demo_dlg.cpp	241 242 245
/src/gui/widgets/hit_matrix/density_map_ds.cpp	46 47 51
/src/gui/widgets/hit_matrix/hit_matrix_ds_builder.cpp	92 99
/src/gui/widgets/hit_matrix/hit_matrix_renderer.cpp	303 305
/src/gui/widgets/hit_matrix/seq_graph.cpp	67 69
/src/gui/widgets/loaders/gb_object_loader.cpp	99 100 137 142 143 147 156
/src/gui/widgets/loaders/resolve_id_dlg.cpp	259 260 261
/src/gui/widgets/object_list/demo/demo_feat_table_frame.cpp	182 183 195
/src/gui/widgets/seq/fasta_retrieve_job.cpp	116 117 121 125 138
/src/gui/widgets/seq/flat_file_locus_item.cpp	74 75 76 79
/src/gui/widgets/seq/flat_file_retrieve_job.cpp	391 392 393 394
/src/gui/widgets/seq/flat_file_sequence_list_job.cpp	124 125 126
/src/gui/widgets/seq/text_fasta.cpp	77 78 84
/src/gui/widgets/seq/text_fasta_ds.cpp	40 42
/src/gui/widgets/seq/text_panel.cpp	510 511 512 515 516 517 520 521 522 525 526 527 1395 1396
/src/gui/widgets/seq_graphic/alignment_job.cpp	108 112 128 134 149 155 170 176 206 222 235 1417 1424 2059 2065 2076 2084 2137 2191 2197 2211 2274 2386 2390 2404 2406 2410
/src/gui/widgets/seq_graphic/alignment_quality_score.cpp	198 199 204
/src/gui/widgets/seq_graphic/alignment_smear_glyph.cpp	45 48 52 56
/src/gui/widgets/seq_graphic/epigenomics_track.cpp	59 62
/src/gui/widgets/seq_graphic/feature_ds.cpp	105 109 130 133 241 250 383 636 640 649 654 697 703 716 722 1524 1530 2445 2461 2474 2487 2502 2523 2574 2577
/src/gui/widgets/seq_graphic/feature_panel_ds.cpp	100 257 261
/src/gui/widgets/seq_graphic/segment_map_ds.cpp	65 68 106 109 165 333 337 346 364 387 403 665 671 686 693 1080 1082
/src/gui/widgets/seq_graphic/seqgraphic_graph_ds.cpp	136 143 157 179 185 186
/src/gui/widgets/seq_graphic/seqgraphic_job.cpp	144 147
/src/gui/widgets/seq_graphic/seqgraphic_pane.cpp	674 675 676 691 693 752 753
/src/gui/widgets/seq_graphic/seqgraphic_utils.cpp	52 54 56 67 79 82 85 86 94 96 111 112 130 132 135 167 169 181 183 211 214 215
/src/gui/widgets/seq_graphic/six_frames_trans_track.cpp	73 76
/src/gui/widgets/seq_graphic/vcf_ds.cpp	201 315 322
/src/gui/widgets/seq_text/demo/seq_text_demo_dlg.cpp	262 263 264
/src/gui/widgets/seq_text/demo/seq_text_demo_ui.cpp	102 103 112
/src/gui/widgets/seq_text/seq_text_ds.cpp	63 64 81 86 88 89 94 96 296 297 297 300 440 444 448 896 897 915
/src/gui/widgets/seq_text/seq_text_panel.cpp	270 271 277 289 290 291 298 299
/src/gui/widgets/tax_tree/tax_tree_ds.cpp	115 116 116 120 159 160 161
/src/gui/widgets/wx/selection_control.cpp	286 287 595 596
/src/gui/widgets/wx/sticky_tooltip_wnd.cpp	138 141 206 210 337 340 442 447
/src/misc/clog/app/ncbi_applog.cpp	694
/src/misc/discrepancy/discrepancy_stream.cpp	261 262 578 579 607 608
/src/misc/discrepancy/sequence_tests.cpp	410 411
/src/objects/seqloc/Seq_loc.cpp	4254 4256 4259 4261 4263 4265
/src/objmgr/annot_collector.cpp	689 690
/src/objmgr/bioseq_edit_commands.cpp	44 45
/src/objmgr/bioseq_set_handle.cpp	634 636
/src/objmgr/data_source.cpp	1393 1402 1430 1438
/src/objmgr/edits_db_saver.cpp	174 177 180 184 188 200 204 209 212 215 218 224 228 233 236 239 242 248 252 256 258 261 263 269 274 279 282 285 288 292 297 302 305 308 311 324 330 349 354 357 362 365 370 373 378 381 386 389 394 397 402 405 410 413 418 421 426 431 436 441 443 446 448 451 453 456 458 461 463 466 468 471 473 476 478 481 483 486 488 495 501 507 512 520 522 525 534 556 562 577 582 585 590 593 598 601 606 609 614 617 622 627 632 636 638 641 643 646 648 651 653 656 658 661 663 670 675 707 713 725 729 731 738 741 743 761 768 780 786 836 840 845 850 854 859 863 867 872 922 926 947 952 954 962 966 969 973 976 980 1002 1006 1006 1009 1013 1013 1016 1020 1020
/src/objmgr/prefetch_actions.cpp	159 160
/src/objmgr/scope_impl.cpp	681 682 687 688 1918 1920 1921 1922 1925 1926 1928 1939 1960
/src/objmgr/seq_annot_handle.cpp	336 338 339 340 348 350 351 352 360 362 363 364
/src/objmgr/seq_descr_ci.cpp	52 54 55 62 64 65
/src/objmgr/seq_entry_edit_commands.cpp	47 49
/src/objmgr/seq_entry_handle.cpp	476 478 586 588 632 634
/src/objmgr/seqdesc_ci.cpp	85 88 89 90 91 92 95 98 121 128 129 147 154 155
/src/objmgr/test/test_helper.cpp	867 868 872 875 879 881 929 975 980 1023 1074 1118 1131 1136 1164 1175 1232 1234 1250 1252 1301 1304 1340 1342 1371 1373 1386 1387 1396 1426 1432 1432 1441 1448 1449
/src/objmgr/util/seqtitle.cpp	83 87 1188 1196 1208 1265 1272 1279 1299 1307 1348
/src/objmgr/util/sequence.cpp	115 118 124 245 250 264 266 274 276 295 297 621 624 626 1698 1700 2727 2730 2737 2748 2752 2753 3322 3328 3330 3332 3332 3337 3351 3359 4151 4158
/src/objmgr/util/weight.cpp	212 216 217 226 276 278 295 336 344 349 352 361
/src/objtools/align/alngraphic.cpp	328 329 330 336 372 373 374 380 471 472 478 937 938 944
/src/objtools/align_format/align_format_util.cpp	1089 1091 1109 1115 1579 1580 3682 3683 3743 3744 3961 3962 4353 4360 4364 4371 4374 4547 4555 4558
/src/objtools/align_format/seqalignfilter.cpp	807 808
/src/objtools/align_format/showalign.cpp	660 685 690 703 802 810 829 1959 1960 2634 2635 2639 2735 4751 4752
/src/objtools/align_format/showdefline.cpp	243 251 253 257 259 382 388 390 427 449 624 625 626 1580 1581
/src/objtools/align_format/tabular.cpp	576 596 633 649 657
/src/objtools/align_format/taxFormat.cpp	920 921 923 931 935 949
/src/objtools/alnmgr/aln_seqid.cpp	65 66 67 70
/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp	61 64 65 68
/src/objtools/blast/seqdb_reader/seqdbvol.cpp	1243 1244
/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp	84 207 231 334 469 513
/src/objtools/data_loaders/genbank/gbnative.cpp	893 899 966
/src/objtools/edit/apply_object.cpp	247 248
/src/objtools/format/flat_seqloc.cpp	164 167 173 174 174 185 711 713 714
/src/objtools/format/gather_items.cpp	929 930 931 932 4123 4127 4128 4131 4132 4255 4259 4260 4263 4264
/src/objtools/pubseq_gateway/cache/psg_cache_base.hpp	73
/src/objtools/pubseq_gateway/cache/psg_cache_blob_prop.cpp	134 145
/src/objtools/pubseq_gateway/client/psg_client_transport.cpp	1485 1499 1504 1609 1629 1662 1767
/src/objtools/pubseq_gateway/client/psg_client_transport.hpp	706 708 712 714 864 866 869 872 874 875 1052 1054 1073 1074 1079 1082 1086 1087 1091 1093 1094 1095 1127
/src/objtools/pubseq_gateway/myncbi/myncbi_factory.cpp	62 64 116 118 119 121 349 352 354 357 358 360 365 368 369 370 371 372
/src/objtools/snputil/snp_bins.cpp	75 77 79 124 130
/src/objtools/test/objmgr/id_unit_test.cpp	1337 1338
/src/objtools/test/objmgr/seqvec_bench.cpp	185 186 207 225 251 265 280 296 312 338 352 366 388
/src/objtools/test/objmgr/test_edit_saver.cpp	349 351 359 363 369 375 394 396 404 409 411 414
/src/objtools/test/objmgr/test_objmgr_data.cpp	441 443 446 449 452 453 455 462 467 471 515 521 533 547 547 548 556 556 557 565 582 597 630 676 699 703 707 735 736 739 742 743 744 745 747
/src/objtools/test/objmgr/test_objmgr_data_mt.cpp	399 401 404 407 412 413 415 418 425 427 430 459 465 477 490 522 544 551 571 594 597
/src/objtools/test/objmgr/test_objmgr_title.cpp	86 94
/src/objtools/test/objmgr/test_seqvector_ci.cpp	300 303 310 396
/src/objtools/test/objmgr/util/test_feat_overlap.cpp	113 114 128 202
/src/objtools/test/objmgr/util/test_relloc.cpp	86 88 94 108
/src/objtools/test/objmgr/util/test_title.cpp	102 103 111 112
/src/objtools/validator/utilities.cpp	246 248 249
/src/objtools/writers/agp_write.cpp	276 281 283 288 300 302 303 305 325 331 331 333 338 345 347 367 375 375 377 382 391 393
/src/objtools/writers/fasta_writer.cpp	1143 1145 1151 1160 1163 1165 1184
/src/objtools/writers/src_writer.cpp	196 198
/src/objtools/writers/unit_test/unit_test_srcwriter.cpp	203 204 279 280
/src/sample/app/objmgr/bioseq_edit_sample.cpp	91 93
/src/sample/app/objmgr/sample_saver.cpp	98 101 104 108 111
/src/sample/app/objmgr/sample_saver.hpp	58 59
/src/sra/readers/bam/test/bam_test.cpp	313
/src/util/compress/api/tar.cpp	1464 1467 1470 1471 1474 1549 1550
/src/util/compress/bzip2/bzip2recover.c	145 158 171 183 205 227 230 233
/src/util/compress/bzip2/bzlib.c	894 944 978 997 998 1037 1056 1057 1065 1066 1067 1117 1186 1189 1191 1192 1204 1520
/src/util/image/image_io_tiff.cpp	93 95 103 105 121 124 144 146 156 159
/src/util/lmdb/mdb.c	295 296 297 298 383 1260 1261 1262 2644 3823 3982 4121 4237 4240 4800 9049 9318 9449 9548 9557 9567
/src/util/regexp/pcregrep.c	675 708 709 729 747 1502 1538 1547 1555 2149 2310 2322 2336 2342 2352
/src/util/regexp/pcretest.c	107 107

2986 references in 377 files.