NCBI VAST+ Logo
2XRX: 
CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE IN COMPLEX WITH BIPHENYL FROM BURKHOLDERIA XENOVORANS LB400
Biological unit 1: hexameric
Source organism: Paraburkholderia xenovorans LB400
Number of proteins:
6 (BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DI... ▼)
Protein molecule
close
AA -Click to explore this molecule neighborsCC -Click to explore this molecule neighborsEE -Click to explore this molecule neighbors
 BIPHENYL DIOXYGENASE SUBUNIT ALPHA
BB -Click to explore this molecule neighborsDD -Click to explore this molecule neighborsFF -Click to explore this molecule neighbors
 BIPHENYL DIOXYGENASE SUBUNIT BETA
Number of chemicals:
9 (BIPHENYL (3),FE (II) ION (3),FE2/S2 (INORGANIC)... ▼)
Chemical
close
BIPHENYL (3)
FE (II) ION (3)
FE2/S2 (INORGANIC) CLUSTER (3)
Similar Structures (661)help
helphelp
help
Showing 1 to 10 out of 661 selected structures help
      PDB ID Description Taxonomy▲▼ Aligned Protein▲▼ RMSD▲▼ Aligned Residues▲▼ Sequence Identity▲▼
1
Expand row
Full
 2XSO
CRYSTAL STRUCTURE OF P4 VARIANT OF BIPHENYL DIOXYGENASE FROM BURKHOLDERIA XENOVORANS LB400
Paraburkholderia xenovorans LB400
 6 0.33Å 1839 99%
2
Expand row
Full
 5AEU
Crystal structure of II9 variant of Biphenyl dioxygenase from Burkholderia xenovorans LB400
Paraburkholderia xenovorans LB400
 6 0.47Å 1839 99%
3
Expand row
Full
 2XR8
Crystal structure of biphenyl dioxygenase from Burkholderia xenovorans LB400
Paraburkholderia xenovorans LB400
 6 0.32Å 1836 100%
4
Expand row
Full
 2XSH
CRYSTAL STRUCTURE OF P4 VARIANT OF BIPHENYL DIOXYGENASE FROM BURKHOLDERIA XENOVORANS LB400 IN COMPLEX WITH 2,6 DI CHLOROBIPHENYL
Paraburkholderia xenovorans LB400
 6 0.36Å 1836 99%
5
Expand row
Full
 2YFJ
Crystal structure of Biphenyl dioxygenase variant RR41 with dibenzofuran
Paraburkholderia xenovorans LB400
 6 0.38Å 1836 99%
6
Expand row
Full
 2YFI
Crystal Structure of Biphenyl dioxygenase variant RR41 (BPDO-RR41)
Paraburkholderia xenovorans LB400
 6 0.38Å 1836 99%
7
Expand row
Full
 2YFL
Crystal Structure of Biphenyl dioxygenase variant RR41 with 2-chloro dibenzofuran
Paraburkholderia xenovorans LB400
 6 0.53Å 1836 99%
8
Expand row
Full
 5AEW
Crystal structure of II9 variant of Biphenyl dioxygenase from Burkholderia xenovorans LB400 in complex with biphenyl
Paraburkholderia xenovorans LB400
 6 0.61Å 1836 99%
9
Expand row
Full
 1WQL
Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01
Pseudomonas fluorescens
 6 1.09Å 1824 70%
10
Expand row
Full
 3GZY
Crystal Structure of the Biphenyl Dioxygenase from Comamonas testosteroni Sp. Strain B-356
Comamonas testosteroni
 6 0.92Å 1823 75%
First PreviousofPagesNext Last
{"1":"BIPHENYL DIOXYGENASE SUBUNIT ALPHA","2":"BIPHENYL DIOXYGENASE SUBUNIT BETA","3":"BIPHENYL DIOXYGENASE SUBUNIT ALPHA","4":"BIPHENYL DIOXYGENASE SUBUNIT BETA","5":"BIPHENYL DIOXYGENASE SUBUNIT ALPHA","6":"BIPHENYL DIOXYGENASE SUBUNIT BETA"}
Citing VAST
Gibrat JF, Madej T, Bryant SH. "Surprising similarities in structure comparison.", Curr Opin Struct Biol.1996 Jun;6(3):377-85
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. "MMDB and VAST+: tracking structural similarities between macromolecular complexes." Nucl. Acids Res. 2014 Jan;42(Database issue):D297-303
Thomas Madej, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Stephen H Bryant "Biological Assembly Comparison With VAST" Methods Mol. Biol. 2020(2112):175-186
X
?Original VAST
Original VAST finds structures that are similar to individual protein molecules, or individual 3D domains, in your query structure. Select a protein molecule ("chain") or 3D domain of interest from the table below to view a list of other proteins or domains that have a similar 3D shape. In contrast to VAST+, which focuses on the default biological unit, Original VAST lists all protein molecules in the asymmetric unit of the query structure.
-