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ASM21099v1

Organism name:
Streptococcus pneumoniae SPN034156 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SNP034156
BioSample:
SAMEA3138389
BioProject:
PRJNA50793
Submitter:
Wellcome Trust Sanger Institute
Date:
2010/07/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000210995.1 (latest)
RefSeq assembly accession:
GCF_000210995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 592318 [UID] 273558 [GenBank] 592318 [RefSeq]

See Genome Information for Streptococcus pneumoniae

There are 46029 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000210995.1-RS_2024_04_02
Annotation Date::04/02/2024 00:43:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,097
CDSs (total)::2,024
Genes (coding)::1,854
CDSs (with protein)::1,854
Genes (RNA)::73
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::170
CDSs (without protein)::170
Pseudo Genes (ambiguous residues)::0 of 170
Pseudo Genes (frameshifted)::90 of 170
Pseudo Genes (incomplete)::81 of 170
Pseudo Genes (internal stop)::58 of 170
Pseudo Genes (multiple problems)::50 of 170
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,024,476
Total ungapped length2,024,476
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000211005.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome FQ312045.1=NC_021006.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,024,476

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pneumoniae SPN034156Streptococcus pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7794.5090.63
Best-match type98.7794.5090.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
-