Conserved Protein Domain Family
SoxH_rel_PQQ_1

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TIGR04558: SoxH_rel_PQQ_1 
quinoprotein relay system zinc metallohydrolase 1
By homology, members are Zn metallohydrolases in the same family as the SoxH protein associated with sulfate metabolism, Bacillus cereus beta-lactamase II (see PDB:1bc2), and, more distantly, hydroxyacylglutathione hydrolase (glyoxalase II). All members occur in genomes with both PQQ biosynthesis and a PQQ-dependent (quinoprotein) dehydrogenase that has a motif of two consecutive Cys residues (see TIGR03075). The Cys-Cys motif is associated with electron transfer by specialized cytochromes such as c551. All these genomes also include a fusion protein (TIGR04557) whose domains resemble SoxY and SoxZ from thiosulfate oxidation. A conserved Cys in this fusion protein aligns to the Cys residue in SoxY that carries sulfur cycle intermediates. In many genomes, the genes for PQQ biosynthesis enzymes, PQQ-dependent enzymes, their associated cytochromes, and members of this family are clustered. Note that one to three closely related Zn metallohydrolases may occur; this family represents a specific clade among them. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 275351
Aligned: 21 rows
Threshold Bit Score: 405.115
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_01915890   39 NLDYGLKATKLAGGWYVIAGSNDDFSQANGCNIINTGFYVDDSGVYVINTGTSRIYGEQQRALIDSVSkNKPVKKVVALN 118 Limnobacter sp....
ZP_01165804   21 PLSYQLTAELVAENTWVLQGKLEDFSKRNGGNIVNTGFIVTGEGVIVIDTGPSLRYGKAMRALIESKT-SQPIRMVFNTH 99  Neptuniibacter ...
ZP_08209829   30 AGTYHLVPVALAEGIWLVRGADAPIAFANGGAIANCVIMASNAGPILFDCGPSRNYATALSALARKLT-GKPPALVLISH 108 Novosphingobium...
ZP_08664395   26 PRSYGLQPFEVADGIWMIEGRREVFSRENGGDIVNIALLATDQGAIIVDSGSTVAMGTEIRAFAEQRL--GGLAATINTH 103 Paracoccus sp. TRP
ZP_07657525   30 PTSYELKPFSVADGIWMIEGSRDYFSRENGGAIVNCALIDTDIGILIVDSGPSKKYGEALLDVARGLN-GRGAAGVMITH 108 Roseibium sp. T...
ZP_08636773   25 FCERPLTAQSVAENTWMVEGLREELSTNNCGHIGNQAFITTPSGVILIDSGSSPHFGEALKTLIAQHT-SHPVRWVLNTH 103 Halomonas sp. TD01
WP_011060518  18 DLDYLLKPRQIAAGTWLLEGSTDNFAKANGGNIVNTGFIVTDSGVVVIDSGPSKRYGEALRRAIAATT-DKPVIQLLLTH 96  Pseudomonas pro...
WP_012585681  49 DFNYRLQPRELAPGAWVVVGLKEDFSFANGGNIVNTGFIVGREGVIVIDTGSSKRYGEQMLAAIRRVT-PLPIVLTVNTH 127 Thauera sp. MZ1T
WP_011047260  30 kLRYDLAPIPVLPGVWMIEGVTDYFDKVNGGAIVNCAVLQGQSGLILIDSGPSRRYGEALAATLRALD-LRGVSAVVNTH 108 Ruegeria pomeroyi
WP_013214383  31 PHRYELTPKKLTDGVWVTRGSDEAINERNGGAIANVAILDSSEGAILIDTGPSRRFGEALMTLAKELT-GKPIARVYLTH 109 Hyphomicrobium ...
ZP_01915890  119 LHPDYFLGNQAYPQETLAATRLTIQGIKAEAALYETNLYRLCGDWMKATESVFPTQTIVPGKLKTfGDKSIETLELKGHT 198 Limnobacter sp....
ZP_01165804  100 HHPDHFLGNQAFDDIPIYSLPQTQKYIKLHGDAFAENMYRLVGDWMRSTESLPPTKALESSDITL-GKHKLKLLSFTGHS 178 Neptuniibacter ...
ZP_08209829  109 LHPDHSLGASAFDPAIVAALPGTIADIERDGPGMSDAMFRMLADWMRGTEVVVPGRRLAAGPFEF-GGRHLQLFSLAGHS 187 Novosphingobium...
ZP_08664395  104 HHPDHWFGNAALADRPLLALAETAATCREYAQDYAETLYSILGSWISGTRTTPATGNIDPGTSQI-GGRALRMIPLAGHT 182 Paracoccus sp. TRP
ZP_07657525  109 HHPDHFLGNQVFADNLIYALPETRALAASEGDGFADNMYRLLGDWMRGTEPLPPNKDITSSFLTI-GGRKLKTLPLAGHT 187 Roseibium sp. T...
ZP_08636773  104 HHPDHFFGNAAFDEAQHLTLASTRALMARDQDALIDNVERLTGRSLERLPIALPN-VIEAGEITL-GNYPLTLFAMSGHS 181 Halomonas sp. TD01
WP_011060518  97 HHPDHVLGNQAFGDVPIGALAGTGDLLRQQGEAMAENMYRMVGDWMRGTEVVLPTQVLEPGVLEV-GGHRLRLLGLSGHT 175 Pseudomonas pro...
WP_012585681 128 HHPDHFLGNQAFPRATLAALPETIAALRSEGEGFNANMYRLNGDWMRDTEVVVPERALAAGRQRI-GGRDVELVALGGHT 206 Thauera sp. MZ1T
WP_011047260 109 HHPDHFFGNQVFADRPILALGDTLAAARRDGDAFADNMYRLLGDWMRGTEPVPPNTALDGGEVTI-DGRRFATLPLSGHT 187 Ruegeria pomeroyi
WP_013214383 110 FHPDHMFGNQAFDPAKLAATKGTIDGMKEYGNAFSDSMYRAAGDWMRGTELVLPQAVVEGAPEDI-GNRRLRPLLMRGHT 188 Hyphomicrobium ...
ZP_01915890  199 DSDLVLFDPGSKVMWAGGLVFYQRIVTTPHA-KLKPWIESLKKLQALKPKVVVPSHGPVSWGSEAIDQTLDYLSWLDKRL 277 Limnobacter sp....
ZP_01165804  179 GSDLVIYDETTGVLFASDMVFYQRALTTPHTpGIDIWRGEIKRLKQISYKLLVPGHGPIVSDQKPLKQMDEYLAWLDLTL 258 Neptuniibacter ...
ZP_08209829  188 ASDLVALDEASGTLLAGDLVFKDRAPATPHA-TLSTWLASLDRLAAIPHRRLVPGHGPWDQDGSGIAQTRDWLTWLDKAL 266 Novosphingobium...
ZP_08664395  183 SADLAILDEATGVLIAGDLVFLDRAPSLPDA-DFATWLASLDQLEGLGSAGVVPGHGSYHRTGEGITQTRAYLQVTRERL 261 Paracoccus sp. TRP
ZP_07657525  188 GADLAILDEKTGTLIAGDLAFLDRAPTTPHA-DLAMWRDALTDMSQQQSSSIIPGHGPIDRTGTSLTQTRAYLDWLEATL 266 Roseibium sp. T...
ZP_08636773  182 GGDLVIMDHATDVLFLGDMGFYQRAAATAHSpSLQQWREELNDLRTLNASVAVPGHGPSAPPEMIIGQTTHYLEWLDQHL 261 Halomonas sp. TD01
WP_011060518 176 GADLAILDENTGVLFAGDLVFYERALTTPNSpGLEAWLKDLDTLQGLPWKLIVPGHGPVASDTAPFAQMRDYLGWLDELM 255 Pseudomonas pro...
WP_012585681 207 VADLVVIDHDSGTVYAADLLFNGRAPTTPHA-DIARWLAALDTLEGLPARRWVPGHGEPATDLAPLRQTRDYLGWLAQAI 285 Thauera sp. MZ1T
WP_011047260 188 EADLALVDVETGLLITGDLAFLDRAPTTPHA-DLAGWQQALTTLEGLGAPAVLPGHGPFDRTGASLRQTRAYLSWLEATL 266 Ruegeria pomeroyi
WP_013214383 189 PSDLALFDEKTGILFAGDLVFLDRAPTTPHA-DIERWRMSLANLSAIPSAMIVPGHGPVESSVRGVEQTSRWLETISHMI 267 Hyphomicrobium ...
ZP_01915890  278 TDAANMGEEMNDVMKKGAPERFQNFAAYPAEFYRNVTTLYPLYEKQAL 325 Limnobacter sp. MED105
ZP_01165804  259 QTSAEQGLSMTEVIQIPIAEKFSDIALTRREFARTVAHLYPHYEEAAF 306 Neptuniibacter caesariensis
ZP_08209829  267 HDASAQGLDMTEAGEIAIPARFAGMQAARYELQRSVSHFYPAIEIDSL 314 Novosphingobium nitrogenifigens DSM 19370
ZP_08664395  262 RMAAELGLTPVETMAAGPAPEFAGLGANPEEYLRSVVRRFGDLETGAL 309 Paracoccus sp. TRP
ZP_07657525  267 KRSAGEGLDMVEIMDLPIPEEFSGMGSMPQEFYRSVAHLYPDIERTVM 314 Roseibium sp. TrichSKD4
ZP_08636773  262 SDVASEGLGANHALAVEIPDSFSTMALTKYEFTRSVMQLYPRYEARLL 309 Halomonas sp. TD01
WP_011060518 256 RDGAAQGDDMAEMIRRPIPERFAGISLTRYELIRSVSHLYPRYERQRL 303 Pseudomonas protegens
WP_012585681 286 RTGAESGQDMTELFQTPIPQRFAGLALVEAEFRRSVVHLFPAAEQAVL 333 Thauera sp. MZ1T
WP_011047260 267 HDAARTGLDMVEVMDLPLPQEFAAMGAQPQEFHRSVAHLFPGVERAVL 314 Ruegeria pomeroyi
WP_013214383 268 GDAFERGLDISEAITLPLPDWTKSIALARYEYERSVMHLYPQFEAARW 315 Hyphomicrobium denitrificans
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