2JH2,1QZN,1TYJ,2B59,2VO8,3FNK,2OZN


Conserved Protein Domain Family
Type_II_cohesin

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cd08547: Type_II_cohesin 
Click on image for an interactive view with Cn3D
Type II cohesin domain, interaction partner of dockerin.
Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type II cohesins; their interactions with dockerin mediate attachment of the cellulosome complex to the bacterial cell wall.
Statistics
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PSSM-Id: 260084
Aligned: 110 rows
Threshold Bit Score: 40.8512
Created: 9-Mar-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dockerin
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:dockerin binding interface [polypeptide binding site]
Evidence:
  • Structure:2B59: A Clostridium thermocellum type II cohesin binds dockerin, contacts at 4 A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            ##                                        # #
2JH2_A         16 GSVSLEALee--vqVGENLEVGVGIDELvnaEAFAYDFTLNYDeNAFEYVEaisd-------------------dgvFVN 74   Clostridium p...
2B59_A         19 SSIELKFDrnk-geVGDILIGTVRINNIk--NFAGFQVNIVYDpKVLMAVDpetgkeftsstfppgrtvlknnaygpIQI 95   Clostridium t...
NP_952828     688 GSLNIAAPag--vdLGGQFKVEVKVTDVk--GLAKAPFTLLYDpIFIEYVGaaegnfln----------rdgkptifNAL 753  Geobacter sul...
YP_564893      33 AVVSISPPdql-isIGSNVTVIIYVDPDv--PVSGAQFDLDFDgDILSVISisegdiftn---------gvstlfsgGTI 100  Methanococcoi...
YP_565443     844 TPVVMSSSaqi-vsPGQPFSIGISIDPSe--PVSGAQLDLLFDeQLVSAEGtiegdl--------------fnlngaSTL 906  Methanococcoi...
YP_565444      51 MAFTVSSGevlnvaPGETFNVDVFVSPDv--DIAGMQFDLLFDsSKFQIDSvt-----------------------eGNL 105  Methanococcoi...
YP_001230692  662 ITLNVVAPas--vkVNEQFSVGIKVADAn--NLLNAPLTLVYDpLFLDFVGlaeggfmkq---------dgkatlfrPTI 728  Geobacter ura...
YP_002138099  736 SLIALSLPak--vkLNDQFSVQVNGSGMr--DLYKAVFVLSYDpKLLDAISqsegnllk----------qpgkpstfQAF 801  Geobacter bem...
YP_002538099  671 VTVNLAAPas--veLNSQFSVEIKVANAt--NLINAPFTFAYDpIFLELIRltegpfmkk---------dgkpttfrPTI 737  Geobacter sp....
YP_003191420  363 TIVGIDPAtkt-vsAGDTFDLDVLITPAt--AIAGAQFNLSYDpAVLQVNSvteggllkq--------ngntsffltGVI 431  Desulfotomacu...
Feature 1          #          #   ###                                                         #   
2JH2_A         75 AKKIe---dGKVRVLVSSLtge------------plpAKEVLAKVVLRAeak-aeGSNLSVT----------NSSVGDg- 127  Clostridium p...
2B59_A         96 ADNDpe--kGILNFALAYSyiagyk------etgvaeESGIIAKIGFKIlq--kkSTAVKFQdtlsmpgaisGTQLFDw- 164  Clostridium t...
NP_952828     754 ADKAa----GRVVITMDRSaage-----------gvdGSGTLLSATFKAkn--kgPASLGLQ----------NVKFVDq- 805  Geobacter sul...
YP_564893     101 DNLE-----GNIMNVYGALfgkn-----------eviKSGTFATIVFETks--sgSSSLQLS----------NVVVSNs- 151  Methanococcoi...
YP_565443     907 FNSGtigdsGVITDIYCSIigaa-----------pvsSKGTMATIAFTAgnt-agVAEFSLS----------DVVISNar 964  Methanococcoi...
YP_565444     106 FKQSg---mGTFFVAASVTpglldntygcilgnaavlTPANFATITITAnehasgRSAFILK----------DVIVSDp- 171  Methanococcoi...
YP_001230692  729 DKNT-----GQIAVTLNRVgdvg-----------gisGSGTLLTATFKAkn--qgPASIGFL----------DVNFTAp- 779  Geobacter ura...
YP_002138099  802 ADKKk----GEIWMSGMREept-------------gtANGILANISFKAig--tgSAAVSVN----------NTNFSKk- 851  Geobacter bem...
YP_002538099  738 DKVT-----GQVAISLSRPvevg-----------gvtGSGTLAIATFRAkn--qgPASMGFL----------DTNLTAv- 788  Geobacter sp....
YP_003191420  432 DNNS-----GLLNNVAGAIttsg----------gevsGAGSLAVISFTAka--tgTSTLTLS----------NVIAANka 484  Desulfotomacu...
Feature 1                  ##                             
2JH2_A        128 --------eGLV-------------------HEIAGTEKT 140  Clostridium perfringens
2B59_A        165 --------dGEVi------------------TGYEVIQPD 178  Clostridium thermocellum ATCC 27405
NP_952828     806 --------aNRPld---------------iiPYNTVVEVK 822  Geobacter sulfurreducens PCA
YP_564893     152 --------iGAAvpiavi-------ngivsiNGDSVTEVG 176  Methanococcoides burtonii DSM 6242
YP_565443     965 -------seGTPyt---------------vtDTMVVIDTA 982  Methanococcoides burtonii DSM 6242
YP_565444     172 --------kGNA-------------------VNVGILNTE 184  Methanococcoides burtonii DSM 6242
YP_001230692  780 --------gGKPle---------------aiPYNAVVDIK 796  Geobacter uraniireducens Rf4
YP_002138099  852 --------tGEDip---------------vtAFKSVVEVQ 868  Geobacter bemidjiensis Bem
YP_002538099  789 --------gGKPvd---------------alSYSAVVEVK 805  Geobacter sp. FRC-32
YP_003191420  485 aqavpvqvnGGSvtvqggtssesvsgvsldkTSYSLTVGE 524  Desulfotomaculum acetoxidans DSM 771

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