Conserved Protein Domain Family
cv_Nsp4_TM

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cd21473: cv_Nsp4_TM 
coronavirus non-structural protein 4 (Nsp4) transmembrane domain
Nsp4 may be involved in coronavirus-induced membrane remodeling. In order to assemble the replication-transcription complex (RTC), coronavirus induces the rearrangement of host endoplasmic reticulum (ER) membrane into double membrane vesicles (DMVs), zippered ER, or ER spherules. DMV formation has been observed in SARS-CoV cells overexpressing the three transmembrane-containing non-structural proteins of viral replicase polyprotein 1ab: Nsp3, Nsp4 and Nsp6. Together, Nsp3, Nsp4, and Nsp6 have the ability to induce the formation of DMVs that are similar to those seen in SARS-CoV-infected cells.
Statistics
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PSSM-Id: 394836
Aligned: 53 rows
Threshold Bit Score: 372.311
Created: 17-Apr-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
Feature 1:putative TM helix 1 [structural motif]
Evidence:
  • Comment:transmembrane helix 1
  • Comment:TM regions predicted for SARS-CoV and SARS-CoV2 using various TM prediction algorithms

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #######################                                                         
Q98VG9       2426 LFWCLVLFITLYGLCSVYSVATQsyids------aegyDYMVIKNGVVQSFDDSINCVHNTYKGFAVWFKAKHGfvptFD 2499 Feline infect...
ACJ12043     1961 KFLVVFLVLYATAFGLSTIASYAynpshpavmsdihttGFYVIRDGVLDTIRSTDTCFSNKFVSFDGYIQAEYT----ND 2036 Bulbul corona...
YP_002308496 1986 FVVCLIALYALAYGMATLAVYVYqpiyptv-msdiptsGFYVIRDGVLDNIRSTDTCFSNKFVSFDAYLQADYV----NS 2060 Thrush corona...
YP_002308505 2047 YTILAICAVYAFAFALSCAAARLtlhtvpsiktdmrvdNFYVIRDGVLDTIRATDNCFANKFLSFDSFHQATYT----NS 2122 Munia coronav...
YP_005352853 1994 YTFLAIGAVYALAFALSCAAAQLtlhavpttksdirvsNFYVIRDGVLDTIRSTDNCFANKFLSFDSFHQAPYT----DS 2069 Magpie-robin ...
YP_005352870 1977 FLGYLLAIGLSYCFMWMVTPSPPttlvd------vpatDFRLIRNGVFDVIRSTDTCFSNKFVSFSTWLNRPFT----NS 2046 Wigeon corona...
YP_005352880 1909 KLFAVIAFVYVVAFATFYVANGLtyntvptvksdikvsGFYLIRDGVLDTIRAEDDCFMNKFLAFDSYIQKPYV----NS 1984 Common moorhe...
YP_005352837 1994 KWVLLFGAVYGAALLLSYAATAVsnptiprvksdipttGFYVIRNGVLDTIKSSDTCFSNKFVSFDVYIQADYV----NS 2069 White-eye cor...
AUG59155     2004 CVILALAIVYFAAMAFGFLASQItlntvptiksdirasTFYVVRDGVLDTVRSNDKCFANKFLAFDSFIQAPYT----NS 2079 Porcine delta...
BBC54841     1924 RWLAIIACVYGLAFALTFAVAYVkqptipyimsdipttGFYVIRDGVLDTIRANDKCLSNKFLSFDSYIQSDYV----NS 1999 Pigeon corona...
Feature 1                                                                                         
Q98VG9       2500 KSCPIVLGTVFDLGNmrpIPDVPAYValvGRSLVFAIna-------------------------aFGVTNVCYDhtgaav 2554 Feline infect...
ACJ12043     2037 PACPVVVGVADVTTKs--IPGIPAGVlhrDGGILHIYeqalydrlqrqsmvqealnlkvrplfnlGQQTIVGYTrtevvv 2114 Bulbul corona...
YP_002308496 2061 HNCPVVVGVADVATKs--IPGIPAGVihrDSGILHIYeqslydrlqrqsmvqealglktralfniGYRTVVGYTrsdvvv 2138 Thrush corona...
YP_002308505 2123 PACPVVVGVADVKTHs--VPGIPAGIilrDNLVLHIYelsiyereqrasmvrdalklhtgsifnlDNRVVVGYTqhevvv 2200 Munia coronav...
YP_005352853 2070 PACPVVVGVADVKTQs--VPGIPAGLvmrDNLVLHIYelstyerdqrasmvrdalalrtnsifnlDNRVVVGYTqyevvv 2147 Magpie-robin ...
YP_005352870 2047 PDCPVVVGAISTVGAq--IAGLPGQVlwrNNLLVHVFdkfstsvlgd---------lnllghaswNKRNAVGYTastvvt 2115 Wigeon corona...
YP_005352880 1985 PQCPIVVGIADVTGLs--LPGIPAGViqrDGLILHIYeqslydkllrkslvdgvlniqtrnlfniGNKMVVGYTqhevvt 2062 Common moorhe...
YP_005352837 2070 HHCPVVVGIADVQTLs--VPGIPAGIitrDGGILHVYeqalydrlqrqsmvqealglktkalfnlGHRTVVGYTrtevvt 2147 White-eye cor...
AUG59155     2080 PDCPVVVGVVDVTTHs--IPGIPAGVihrDGLILNIYeqslyethqrqsmvrdalslktanlfnlGQRVVVGYTqhevvv 2157 Porcine delta...
BBC54841     2000 PDCPVVVGIADVHTQs--IPGIPAGVirrDGGILHVYeqalfdrlqrqsmvqealglktrslfniGNKVVVGYTqrevvt 2077 Pigeon corona...
Feature 1                                                                                         
Q98VG9       2555 sknsyfDTCVFNSACTTLtgiGGTVVYCAKQGLVegakLYSELLPDYYYEHASGN----MVKIPAIIRsfgLRFVKTQAT 2630 Feline infect...
ACJ12043     2115 gtsylrSPALFNAKCTYLehhGERNLYCYDVVNKdh-kLYTDVVPHVEYKAVDFNgnlvPFKIPEQLMf-yPHIVRYTGN 2192 Bulbul corona...
YP_002308496 2139 gasymhSPSLFNAKCTYLeyqDKRHLYCFDKVDReh-kLYADVIPHVEYKAVDFNgelvPFKIPEQLLl-yPHIVRYTSN 2216 Thrush corona...
YP_002308505 2201 gssylrSPALFNAKCTYLqrdGNRTLYCYDAVDVph-kLYSDVLPHVEYQAVDFNgevvPLKIPEQILy-yPHIVRYVSN 2278 Munia coronav...
YP_005352853 2148 gssyirSPALFNAKCTYLqldGNRTLYCYDAVDRph-kLYSEVLPHVEYQAVDFNgdvvPFKIPEQIIy-yPHVVRYVSN 2225 Magpie-robin ...
YP_005352870 2116 gnsylnSIALYNSECVYLrleGQRELYCYDRVNDqh-rLYSDIKPHVTYTVESSDgkllPLVVPDQIMy-tPYIVRFSQV 2193 Wigeon corona...
YP_005352880 2063 gdsylySPALFNAKCTFLlynNNRTLYCYDKVDVph-kLYSDVIPHVEYKAVDLNgdyvPFKIPEQLFy-yPHVVRYVSN 2140 Common moorhe...
YP_005352837 2148 gasyirSPALFNAKCTYLqrdGDRRLYCYDTVDTeh-rLYTDVLPHVDYKAVDFNgnlvPFKIPEQLLy-yPHIVRYVSN 2225 White-eye cor...
AUG59155     2158 gtsyfnSPALFNAKCTFLqyqDTRQLYCYDTVPTeh-kLYSDVLPHVEYKAIDINgdlvPFKIPEQIMf-yPHIVRYTSN 2235 Porcine delta...
BBC54841     2078 gtsyirSPALFNAKCTYLqynDNRQLYCYDTVDAqh-kLYTDVLPHVEYKAVDFNgnivPFKIPDQLLy-yPHVVRYVSN 2155 Pigeon corona...
Feature 1                                                                                         
Q98VG9       2631 TYCRVGECTESQAGFCFGGDNWFVYDKEf-gDGYICGSSTLGFFKNVFALFNSNMSVVaTSGAMLANIVIACLAIAVCYG 2709 Feline infect...
ACJ12043     2193 SYCRMGQCFKTNPGICISFTDQFPYSENv-qPGVYCADTGLQLATNFLVGTISGVHVFtSTAALIGSTCVILLCVVGILI 2271 Bulbul corona...
YP_002308496 2217 YYCRMGHCFKTNPGVCVSFTDEFPYSENv-qPGVYCADSGFQLLTNFIIGTVTGVHIFtSTAALLGSTCFILLCVFAILA 2295 Thrush corona...
YP_002308505 2279 TYCRMGQCFNTNPGVCVSFTDEFPYSGNe-mPGVYCADTSFQLASKLVMGTVSGIHVFtSTAALIASTVVIIVCVVLVLA 2357 Munia coronav...
YP_005352853 2226 SYCRMGHCFNTNPGICVSFTDDFPYSENn-vPGVYCADTTFKLASKLLVGTVSGIHVFtSTAALIASTAVIILCVVLVLA 2304 Magpie-robin ...
YP_005352870 2194 NYCRMGHCFDTKPGICISFIHDFIAYTDnlpPGVFCGDNILHLLTNAVIGSIAAKDAFkSTTALMCSTGAIIVCVLVVLF 2273 Wigeon corona...
YP_005352880 2141 NYCRMGHCFRTDPGVCVSFVDAFPYTQNd-vYGVYCASNGYKLVTNLVLGTITGIHVFtSTAALLASTGVIIFCVIFALS 2219 Common moorhe...
YP_005352837 2226 SYCRMGHCFKTNPGLCVSFTDEFPYSENa-qPGVYCADSGYQLFSNLVLGTVSGLHVFtSTAALLGSTCFILICVVAVLT 2304 White-eye cor...
AUG59155     2236 SYCRMGHCFNTNPGICISFTDEFPYSENv-kPGVYCADTSLQLFSNLVLGTVSGIHIFtSTAALLGSTIVIILCVVAVLA 2314 Porcine delta...
BBC54841     2156 SYCRMGHCFKTNPGICVSFTDEFPYSENk-qPGVYCADSGLQLLSNLALGTISGLHIFtSTAALIGSTCVILFCVVAVLA 2234 Pigeon corona...
Feature 1                                                                                         
Q98VG9       2710 VLKFKKIFgdcTLLVVMIIVTLVVNNVSYFVTQNTF-FMIVYAIIYYFTTRKLay---pgVLDAGFIIAYLNMAPWYVLV 2785 Feline infect...
ACJ12043     2272 FQRLFKEY---TTFVLYTLAIAIVNVCGIVLIYKYTaISFVYYTIYLYFVLTFvpvkrniALFYFAVVVIPHISNMQLLT 2348 Bulbul corona...
YP_002308496 2296 FQRLFKEY---TTFVLHTLIIAGVNIIGIALVYKFTaLAIVYYAIYLYCILTFvpikrniALFYFAVVLVPHISNMQLLA 2372 Thrush corona...
YP_002308505 2358 LQRLFREY---TTFVMYTCGLAVINLIGIALMYKCLaLAVPFYVIYLYFVCTFssvkrsvALFYFSVVMLPHVSNMQLLA 2434 Munia coronav...
YP_005352853 2305 IQRLFKEY---TTFVMYTCGLAVVNLVGIALMYKCIaLAFLFYAIYLYFVFTFpslkrsvALFYFSVVMLPHISNMQLLA 2381 Magpie-robin ...
YP_005352870 2274 IQKLFKGY---TTFVLIVVLNAIINLILLYTYMYIPvLAILLYGLYCYLILLCtpm-artVAVILIAVTVIPLCTNTFII 2349 Wigeon corona...
YP_005352880 2220 FQRLFKEY---TVFVVTTLVVAVFNIIGIFLFYKITlLAIVYYVVYVYIALLAapvkrniALFYLCVVFIPHITNMQLLC 2296 Common moorhe...
YP_005352837 2305 FQRLFKEY---TAFVLYTIFIAIINIVGIVLVYNCIsIAFVYYAIYLYCALTLtsvrrniALFYLAIVVVPHISNMQLLA 2381 White-eye cor...
AUG59155     2315 VQRFFKEY---TTFVMYTCGLALVNIVGIALMYKCLvFAIFYYAIYLYFVLTFpsfkrnvALFYFAVVIVPHVSNMQLLA 2391 Porcine delta...
BBC54841     2235 FQKLFKEY---TTFALYTIFIAIVNIIGIVLVYNCVaLAIVYYAIYIYCVLALvpvkrniALFYLAIVVVPHISNMQLLA 2311 Pigeon corona...
Feature 1                        
Q98VG9       2786 LYIMVFLydSLPSLF 2800 Feline infectious peritonitis virus (strain 79-1146)
ACJ12043     2349 IAVVCVL--YLCYSY 2361 Bulbul coronavirus HKU11-796
YP_002308496 2373 IAVVFVC--YLCYSY 2385 Thrush coronavirus HKU12-600
YP_002308505 2435 VVVCSIF--YCLYNY 2447 Munia coronavirus HKU13-3514
YP_005352853 2382 VVVCSIL--YCFYNY 2394 Magpie-robin coronavirus HKU18
YP_005352870 2350 AAVVAVLi-YAGGYY 2363 Wigeon coronavirus HKU20
YP_005352880 2297 LVICGFL--YVVYNY 2309 Common moorhen coronavirus HKU21
YP_005352837 2382 VCVCSVL--YLLYSY 2394 White-eye coronavirus HKU16
AUG59155     2392 LIVCSII--YFLYTY 2404 Porcine deltacoronavirus
BBC54841     2312 CCVCCVL--YLLYNY 2324 Pigeon coronavirus UAE-HKU29

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