3GZF,3VC8


Conserved Protein Domain Family
CoV_NSP4_C

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pfam16348: CoV_NSP4_C 
Coronavirus replicase NSP4, C-terminal
This is the C-terminal domain of the coronavirus nonstructural protein 4 (NSP4). NSP4 is encoded by ORF1a/1ab and proteolytically released from the pp1a/1ab polyprotein. It is a membrane-spanning protein which is thought to anchor the viral replication-transcription complex (RTC) to modified endoplasmic reticulum membranes. This predominantly alpha-helical domain may be involved in protein-protein interactions. It has been shown that in Betacoronavirus, the coexpression of NSP3 and NSP4 results in a membrane rearrangement to induce double-membrane vesicles (DMVs) and convoluted membranes (CMs), playing a critical role in SARS-CoV replication. There are two well conserved amino acid residues (H120 and F121) in NSP4 among Betacoronavirus, essential for membrane rearrangements during interaction with NSP3.
Statistics
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PSSM-Id: 465099
Aligned: 7 rows
Threshold Bit Score: 144.208
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3GZF_A    5 GDKFV--GSFESAAMGTFVIDMRSYETLVNS--TSLDRIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYS-VS 79  
P0C6U2 2873 GDKFV--GTFESAAAGTFVIDMRSYEKLANS--ISPEKLKSYAASYNRYKYYSGNANEADYRCACYAYLAKAMLDFS-RD 2947 Human coronavirus 229E
Q98VG9 2811 GDKFV--GSFESAAMGTFVIDMRSYETLVNS--TSLDRIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYS-VS 2885 Feline infectious p...
P0C6V3 2687 GNEFV--GNYDLAAKSTFVIRGSEFVKLTNE--IG-DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALDQYR-NS 2760 Avian infectious br...
P0C6U8 3146 GVTF---STFEEAALCTFLLNKEMYLKLRSEtlLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFS-NS 3221 Severe acute respir...
P0C6V0 3237 GTEVRsdGTFEEMALTTFMITKESYCKLKNS--VSDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQLAKAMETFNhNN 3314 Murine hepatitis vi...
3VC8_A    1 ---gplgSTFEEMALTTFMITKESYCKLKNS--VSDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQLAKAMETFNhNN 75  
3GZF_A   80 RNDKLYTPPTVSVNSTL 96  
P0C6U2 2948 HNDILYTPPTVSYGSTL 2964 Human coronavirus 229E
Q98VG9 2886 RNDMLYTPPTVSVNSTL 2902 Feline infectious peritonitis virus (strain 79-1146)
P0C6V3 2761 GVEIVYTPPRYSIGVSr 2777 Avian infectious bronchitis virus (strain Beaudette)
P0C6U8 3222 GADVLYQPPQTSITSAV 3238 Severe acute respiratory syndrome-related coronavirus
P0C6V0 3315 GNDVLYQPPTASVTTSF 3331 Murine hepatitis virus strain A59
3VC8_A   76 GNDVLYQPPTASVTTSF 92  
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