PMC full text:
Published online 2007 Jan 12. doi: 10.1128/JB.01484-06
TABLE 5.
Variant SLV alleles among all CCs and singletons identified in the study collection and identification of the genetic events involved
| ST of clonal ancestor | ST of SLV | Variant locus | Ancestral allele | SLV allele | No. of nucleotide differences | Other CC(s) containing SLV allele | Amino acid changea | Genetic eventb |
|---|---|---|---|---|---|---|---|---|
| 1 | 83 | gtr | 2 | 1 | 7 | CC1, CC2, CC21, S55 | 2 Syn + E→V, L→H, A→V, C→H, L→S | R |
| 1 | 38 | mut | 2 | 5 | 4 | CC11, CC33, CC49, CC66, S39, S82 | 1 Syn + A→S, I→T, E→K | R |
| 2 | 80 | arc | 7 | 21 | 1 | CC23 | 1 Syn | M |
| 2 | 54 | arc | 7 | 1 | 13 | CC1, CC42, S32, S44, S55, S60, S65, S73 | 10 Syn + K→E, I→V, K→Q | R |
| 2 | 35 | arc | 7 | 2 | 14 | CC21, S8 | 10 Syn + K→E, I→V, K→Q, E→K | R |
| 2 | 67 | gtr | 2 | 18 | 1 | None | D→H | M |
| 2 | 76 | mut | 2 | 14 | 1 | None | 1 Syn | M |
| 2 | 74 | mut | 2 | 12 | 2 | None | 1 Syn + S→C | R |
| 2 | 43 | pyr | 4 | 1 | 2 | CC1, CC21, CC42, S44, S8 | 2 Syn | R |
| 2 | 22 | tpi | 1 | 7 | 1 | None | T→S | M |
| 2 | 75 | tpi | 1 | 13 | 1 | CC42, S39 | 1 Syn | R |
| 2 | 48 | yqiL | 1 | 4 | 6 | CC11 | 6 Syn | R |
| 2 | 45 | arc | 7 | 20 | 2 | None | G→? | R |
| 4 | 61 | arc | 1 | 2 | 1 | CC21, S8 | E→K | R |
| 5 | 77 | arc | 1 | 23 | 1 | None | 1 Syn | M |
| 5 | 87 | arc | 1 | 7 | 13 | CC23 | 10 Syn + K→D, I→V, K→Q | R |
| 5 | 57 | mut | 1 | 2 | 2 | CC1, CC21, S44 | 1 Syn + Y→R | R |
| 5 | 46 | yqiL | 1 | 7 | 1 | None | Y→H | M |
| 6 | 17 | gtr | 2 | 6 | 8 | S44 | 2 Syn + V→A, E→V, A→V, P→T, C→H, L→S | R |
| 6 | 5 | gtr | 2 | 1 | 7 | CC1, CC21, S55 | 2 Syn + E→V, L→H, A→V, C→H, L→S | R |
| 6 | 58 | pyr | 1 | 13 | 1 | CC42, S39 | Y→R | R |
| 6 | 85 | pyr | 2 | 1 | 1 | CC1, CC21, CC42, S8, S44 | 1 Syn | R |
| 6 | 89 | mut | 2 | 1 | 2 | CC2, CC23, CC42, S8, S32, S55, S90 | A→S, I→L | R |
| 10 | 41 | yqiL | 1 | 11 | 7 | CC11, C66 | 1 Syn + Y→H, E→G, Y→C, L→S, F→C, I→T | R |
| 11 | 53 | pyr | 3 | 11 | 2 | CC49 | 2 Syn | R |
| 11 | 71 | tpi | 4 | 1 | 3 | CC1, CC2, CC21, CC66, S8, S44, S55, S60, S73 | 1 Syn, G→S, W→R | R |
| 11 | 50 | yqiL | 11 | 4 | 1 | CC2, S82 | S→L | R |
| 14 | 86 | aro | 1 | 2 | 1 | CC1, CC21, CC49, S55, S72 | I→K | R |
| 17 | 69 | aro | 1 | 18 | 1 | None | 1 Syn | M |
| 17 | 4 | mut | 2 | 6 | 1 | S60, S73 | 1 Syn | R |
| 20 | 34 | tpi | 1 | 13 | 1 | CC42, S39 | 1 Syn | R |
| 21 | 52 | aro | 1 | 2 | 1 | CC1, CC2, CC49, S55, S72 | I→K | R |
| 22 | 70 | pyr | 4 | 14 | 1 | None | I→N | M |
| 23 | 79 | arc | 21 | 7 | 1 | CC2 | 1 Syn | R |
| 33 | 47 | aro | 10 | 1 | 13 | CC2, CC11, CC21, CC23, CC49, S8, S32, S60, S90 | 8 Syn + R→S, Y→N, K→I, I→L, I→V | R |
| 42 | 36 | arc | 1 | 11 | 1 | None | V→L | M |
| 43 | 51 | yqiL | 1 | 8 | 5 | None | 1 Syn + E→G, Y→C, I→T, Y→H | R |
| 49 | 84 | aro | 1 | 2 | 1 | CC1, CC2, CC21, S55, S72 | I→K | R |
| 49 | 64 | pyr | 3 | 11 | 2 | CC11 | 2 Syn | R |
| 50 | 62 | aro | 1 | 21 | 1 | None | V→G | M |
| 54 | 6 | pyr | 4 | 2 | 1 | S55, S60 S73, S90 | 1 Syn | R |
| 57 | 59 | arc | 1 | 2 | 1 | CC21, S8 | E-K | R |
| 57 | 10 | pyr | 2 | 3 | 10 | CC11, CC23, CC49, S32, S82 | 9 Syn + Y→R | R |
| 59 | 81 | aro | 1 | 17 | 1 | None | 1 Syn | M |
| 64 | 37 | arc | 12 | 18 | 1 | None | I→Y | M |
| 66 | 68 | tpi | 14 | 1 | 2 | CC1, CC2, CC11, CC21, S8, S44, S55, S60, S73 | 2 Syn | M |
| 75 | 63 | arc | 7 | 22 | 2 | S39 | N→H, I→M | R |
| 80 | 78 | tpi | 1 | 13 | 1 | CC42, S39 | 1 Syn | R |
| 85 | 14 | mut | 2 | 1 | 2 | CC23, CC42, S8, S32, S55, S90 | 1 Syn + A→S | R |
| 85 | 20 | yqiL | 1 | 3 | 1 | None | U→E | M |
| 89 | 40 | pyr | 2 | 3 | 10 | CC11, CC23, CC49, S32, S82 | 9 Syn + Y→R | R |
| 89 | 88 | yqiL | 1 | 7 | 1 | None | Y→H | M |
| Total | 95 Syn + 71 Non-Syn | 37R+15M |
aSyn, synonymous substitutions; Non-syn, nonsynonymous substitutions. Capital letters correspond to amino acids.
bR, recombination event; M, mutation event.