PMC full text:
Published online 2012 Jun 25. doi: 10.1186/gb-2012-13-6-r56
Table 3
Functional properties of gap closed regions
| Annotation type | Total size in NC_000014 (bp) | Nucleotides closed with GapFiller (bp) | Portion of total nucleotides closed (%) |
|---|---|---|---|
| Gene | 38,883,890 | 33,969 | 38.67% |
| mRNA | 34,180,962 | 26,818 | 30.53% |
| CDS | 29,380,348 | 23,617 | 26.89% |
| Other RNA | 3,245,865 | 2,755 | 3.14% |
| V-segment | 78,961 | 655 | 0.75% |
| C-region | 36,984 | 23 | 0.03% |
| ncRNA | 11,447 | 0 | 0% |
| Total | 105,818,457 | 87,837 | 100.00% |
Functionalities associated with the nucleotides incorporated with GapFiller based on the annotation of human chromosome 14. Clearly the method can add valuable sequence information to a number of functionalities present in GenBank:NC_000014. Most nucleotides are incorporated in coding sequence (CDS) and mRNA regions. ncRNA, non-coding RNA.