Volume 18(5); Sep-Oct 2011

Highlight

Realizing the full potential of electronic health records: the role of natural language processing

Lucila Ohno-Machado

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 539. doi: 10.1136/amiajnl-2011-000501

PMCID:: PMC3168331

Article PDF–46K

Editorial

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions

Wendy W Chapman, Prakash M Nadkarni, Lynette Hirschman, Leonard W D'Avolio, Guergana K Savova, Ozlem Uzuner

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 540–543. doi: 10.1136/amiajnl-2011-000465

PMCID:: PMC3168329

Article PDF–216K

Review

Natural language processing: an introduction

Prakash M Nadkarni, Lucila Ohno-Machado, Wendy W Chapman

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 544–551. doi: 10.1136/amiajnl-2011-000464

PMCID:: PMC3168328

Abstract Article PDF–250K

Perspective

2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text

Özlem Uzuner, Brett R South, Shuying Shen, Scott L DuVall

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 552–556. Published online 2011 Jun 16. doi: 10.1136/amiajnl-2011-000203

PMCID:: PMC3168320

Abstract Article PDF–110K

Using information mining of the medical literature to improve drug safety

Kanaka D Shetty, Siddhartha R Dalal

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 668–674. Published online 2011 May 5. doi: 10.1136/amiajnl-2011-000096

PMCID:: PMC3168306

Abstract Article PDF–221K

There is no neutral position on fraud!

Donald W Simborg

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 675–677. Published online 2011 Jul 4. doi: 10.1136/amiajnl-2011-000206

PMCID:: PMC3168321

Abstract Article PDF–223K

Health-information exchange: why are we doing it, and what are we doing?

Gilad J Kuperman

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 678–682. Published online 2011 Jun 14. doi: 10.1136/amiajnl-2010-000021

PMCID:: PMC3168299

Abstract Article PDF–299K

Research and Applications

Machine-learned solutions for three stages of clinical information extraction: the state of the art at i2b2 2010

Berry de Bruijn, Colin Cherry, Svetlana Kiritchenko, Joel Martin, Xiaodan Zhu

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 557–562. Published online 2011 May 12. doi: 10.1136/amiajnl-2011-000150

PMCID:: PMC3168309

Abstract Article PDF–113K

MITRE system for clinical assertion status classification

Cheryl Clark, John Aberdeen, Matt Coarr, David Tresner-Kirsch, Ben Wellner, Alexander Yeh, Lynette Hirschman

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 563–567. Published online 2011 Apr 22. doi: 10.1136/amiajnl-2011-000164

PMCID:: PMC3168316

Abstract Article PDF–96K

A flexible framework for deriving assertions from electronic medical records

Kirk Roberts, Sanda M Harabagiu

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 568–573. Published online 2011 Jul 1. doi: 10.1136/amiajnl-2011-000152

PMCID:: PMC3168311

Abstract Article PDF–586K

A knowledge discovery and reuse pipeline for information extraction in clinical notes

Jon D Patrick, Dung H M Nguyen, Yefeng Wang, Min Li

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 574–579. Published online 2011 Jul 7. doi: 10.1136/amiajnl-2011-000302

PMCID:: PMC3168325

Abstract Article PDF–144K

Using machine learning for concept extraction on clinical documents from multiple data sources

Manabu Torii, Kavishwar Wagholikar, Hongfang Liu

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 580–587. Published online 2011 Jun 27. doi: 10.1136/amiajnl-2011-000155

PMCID:: PMC3168314

Abstract Article PDF–492K

Hybrid methods for improving information access in clinical documents: concept, assertion, and relation identification

Anne-Lyse Minard, Anne-Laure Ligozat, Asma Ben Abacha, Delphine Bernhard, Bruno Cartoni, Louise Deléger, Brigitte Grau, Sophie Rosset, Pierre Zweigenbaum, Cyril Grouin

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 588–593. Published online 2011 May 19. doi: 10.1136/amiajnl-2011-000154

PMCID:: PMC3168313

Abstract Article PDF–203K

Automatic extraction of relations between medical concepts in clinical texts

Bryan Rink, Sanda Harabagiu, Kirk Roberts

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 594–600. doi: 10.1136/amiajnl-2011-000153

PMCID:: PMC3168312

Abstract Article PDF–423K

A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries

Min Jiang, Yukun Chen, Mei Liu, S Trent Rosenbloom, Subramani Mani, Joshua C Denny, Hua Xu

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 601–606. Published online 2011 Apr 20. doi: 10.1136/amiajnl-2011-000163

PMCID:: PMC3168315

Abstract Article PDF–126K

Automated concept-level information extraction to reduce the need for custom software and rules development

Leonard W D'Avolio, Thien M Nguyen, Sergey Goryachev, Louis D Fiore

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 607–613. Published online 2011 Jun 22. doi: 10.1136/amiajnl-2011-000183

PMCID:: PMC3168318

Abstract Article PDF–370K

The Yale cTAKES extensions for document classification: architecture and application

Vijay Garla, Vincent Lo Re, III, Zachariah Dorey-Stein, Farah Kidwai, Matthew Scotch, Julie Womack, Amy Justice, Cynthia Brandt

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 614–620. Published online 2011 May 27. doi: 10.1136/amiajnl-2011-000093

PMCID:: PMC3168305

Abstract Article PDF–236K

BT-Nurse: computer generation of natural language shift summaries from complex heterogeneous medical data

James Hunter, Yvonne Freer, Albert Gatt, Ehud Reiter, Somayajulu Sripada, Cindy Sykes, Dave Westwater

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 621–624. Published online 2011 Jul 1. doi: 10.1136/amiajnl-2011-000193

PMCID:: PMC3168319

Abstract Article PDF–162K

Towards spoken clinical-question answering: evaluating and adapting automatic speech-recognition systems for spoken clinical questions

Feifan Liu, Gokhan Tur, Dilek Hakkani-Tür, Hong Yu

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 625–630. Published online 2011 Jun 24. doi: 10.1136/amiajnl-2010-000071

PMCID:: PMC3168303

Abstract Article PDF–229K

Text mining for the Vaccine Adverse Event Reporting System: medical text classification using informative feature selection

Taxiarchis Botsis, Michael D Nguyen, Emily Jane Woo, Marianthi Markatou, Robert Ball

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 631–638. Published online 2011 Jun 27. doi: 10.1136/amiajnl-2010-000022

PMCID:: PMC3168300

Abstract Article PDF–195K

Enrollment into a time sensitive clinical study in the critical care setting: results from computerized septic shock sniffer implementation

Vitaly Herasevich, Matthew S Pieper, Juan Pulido, Ognjen Gajic

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 639–644. Published online 2011 Apr 20. doi: 10.1136/amiajnl-2011-000228

PMCID:: PMC3168322

Abstract Article PDF–212K

Evaluation of the NCPDP Structured and Codified Sig Format for e-prescriptions

Hangsheng Liu, Q Burkhart, Douglas S Bell

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 645–651. Published online 2011 May 25. doi: 10.1136/amiajnl-2010-000034

PMCID:: PMC3168301

Abstract Article PDF–117K

Retrieval of diagnostic and treatment studies for clinical use through PubMed and PubMed's Clinical Queries filters

Cynthia Lokker, R Brian Haynes, Nancy L Wilczynski, K Ann McKibbon, Stephen D Walter

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 652–659. Published online 2011 Jun 15. doi: 10.1136/amiajnl-2011-000233

PMCID:: PMC3168323

Abstract Article PDF–106K

Recommending MeSH terms for annotating biomedical articles

Minlie Huang, Aurélie Névéol, Zhiyong Lu

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 660–667. Published online 2011 May 25. doi: 10.1136/amiajnl-2010-000055

PMCID:: PMC3168302

Abstract Article PDF–287K

Design and development of an international clinical data exchange system: the international layer function of the Dolphin Project

Jing-song Li, Tian-shu Zhou, Jian Chu, Kenji Araki, Hiroyuki Yoshihara

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 683–689. Published online 2011 May 12. doi: 10.1136/amiajnl-2011-000111

PMCID:: PMC3168307

Abstract Article PDF–545K

Health information exchange usage in emergency departments and clinics: the who, what, and why

Kevin B Johnson, Kim M Unertl, Qingxia Chen, Nancy M Lorenzi, Hui Nian, James Bailey, Mark Frisse

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 690–697. doi: 10.1136/amiajnl-2011-000308

PMCID:: PMC3168326

Abstract Article PDF–750K

A framework for assessing patient crossover and health information exchange value

David V LaBorde, Jacqueline A Griffin, Hannah K Smalley, Pinar Keskinocak, George Mathew

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 698–703. Published online 2011 Jun 24. doi: 10.1136/amiajnl-2011-000140

PMCID:: PMC3168308

Abstract Article PDF–239K

Using the time and motion method to study clinical work processes and workflow: methodological inconsistencies and a call for standardized research

Kai Zheng, Michael H Guo, David A Hanauer

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 704–710. Published online 2011 Apr 27. doi: 10.1136/amiajnl-2011-000083

PMCID:: PMC3168304

Abstract Article PDF–754K

User perspectives on the usability of a regional health information exchange

Cynthia S Gadd, Yun-Xian Ho, Cather Marie Cala, Dana Blakemore, Qingxia Chen, Mark E Frisse, Kevin B Johnson

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 711–716. Published online 2011 May 27. doi: 10.1136/amiajnl-2011-000281

PMCID:: PMC3168324

Abstract Article PDF–319K

Brief Communication

Improving the validity of determining medication adherence from electronic health record medications orders

Nikki M Carroll, Jennifer L Ellis, Capp F Luckett, Marsha A Raebel

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 717–720. Published online 2011 May 25. doi: 10.1136/amiajnl-2011-000151

Correction in:: J Am Med Inform Assoc. 2017 Apr; 24(e1): e216.

PMCID:: PMC3168310

Abstract Article PDF–684K

Case Report

Phased implementation of electronic health records through an office of clinical transformation

Colin A Banas, Alistair R Erskine, Shumei Sun, Sheldon M Retchin

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 721–725. Published online 2011 Jun 9. doi: 10.1136/amiajnl-2011-000165

PMCID:: PMC3168317

Abstract Article PDF–315K

Correspondence

In response to: Electronic health records in small physician practices: availability, use, and perceived benefits

Amanda Parsons, Winfred Wu

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 726. Published online 2011 Jun 24. doi: 10.1136/amiajnl-2011-000427

PMCID:: PMC3168327

Article PDF–35K

Messages from AMIA

AMIA president's column: AMIA's corporate relations activities

Edward H Shortliffe

J Am Med Inform Assoc. 2011 Sep-Oct; 18(5): 727–728. doi: 10.1136/amiajnl-2011-000469

PMCID:: PMC3168330

Article PDF–68K

Articles from Journal of the American Medical Informatics Association : JAMIA are provided here courtesy of Oxford University Press