The complete sequence of a human genome
- PMID: 35357919
- PMCID: PMC9186530
- DOI: 10.1126/science.abj6987
The complete sequence of a human genome
Abstract
Since its initial release in 2000, the human reference genome has covered only the euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. Addressing the remaining 8% of the genome, the Telomere-to-Telomere (T2T) Consortium presents a complete 3.055 billion-base pair sequence of a human genome, T2T-CHM13, that includes gapless assemblies for all chromosomes except Y, corrects errors in the prior references, and introduces nearly 200 million base pairs of sequence containing 1956 gene predictions, 99 of which are predicted to be protein coding. The completed regions include all centromeric satellite arrays, recent segmental duplications, and the short arms of all five acrocentric chromosomes, unlocking these complex regions of the genome to variational and functional studies.
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Comment in
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A next-generation human genome sequence.Science. 2022 Apr;376(6588):34-35. doi: 10.1126/science.abo5367. Epub 2022 Mar 31. Science. 2022. PMID: 35357937
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The final pieces of the human genome.Nat Rev Genet. 2022 Jun;23(6):321. doi: 10.1038/s41576-022-00494-5. Nat Rev Genet. 2022. PMID: 35488041 No abstract available.
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The first complete human genome.Nature. 2022 Jun;606(7914):468-469. doi: 10.1038/d41586-022-01368-w. Nature. 2022. PMID: 35606432 No abstract available.
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Digging into the Unknowns of the Human Genome Sequence: The T2T-CHM13 Reference Assembly Release.Mov Disord. 2022 Nov;37(11):2192. doi: 10.1002/mds.29235. Epub 2022 Sep 29. Mov Disord. 2022. PMID: 36173892 No abstract available.
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The absence of CFHR3 and CFHR1 genes from the T2T-CHM13 assembly can limit the molecular diagnosis of complement-related diseases.Eur J Hum Genet. 2023 Jul;31(7):730-732. doi: 10.1038/s41431-023-01350-8. Epub 2023 Apr 10. Eur J Hum Genet. 2023. PMID: 37032353 Free PMC article. No abstract available.
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References
-
- International Human Genome Sequencing Consortium, Initial sequencing and analysis of the human genome. Nature. 409, 860–921 (2001). - PubMed
-
- Venter JC et al. The sequence of the human genome. Science. 291, 1304–1351 (2001). - PubMed
-
- Myers EW et al. A whole-genome assembly of Drosophila. Science. 287, 2196–2204 (2000). - PubMed
-
- Eichler EE, Clark RA, She X, An assessment of the sequence gaps: unfinished business in a finished human genome. Nat. Rev. Genet 5, 345–354 (2004). - PubMed
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