SNP Links for Gene (Select 5739) - SNP

Links from Gene

Items: 1 to 20 of 4848

<< First< Prev

Page of 243

Next >Last >>

Select item 14914750101.

rs1491475010 [Homo sapiens]

Variant type:: DEL
Alleles:: GG>- [Show Flanks]
Chromosome:: 19:46619604 (GRCh38)
19:47122861 (GRCh37)
Canonical SPDI:: NC_000019.10:46619603:GG:
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.01052/39 (TWINSUK)
-=0.0109/42 (ALSPAC)
HGVS:: NC_000019.10:g.46619604_46619605del, NC_000019.9:g.47122861_47122862del

Select item 14914557782.

rs1491455778 has merged into rs201900456 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 19:46622991 (GRCh38)
19:47126248 (GRCh37)
Canonical SPDI:: NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:46622980:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: PTGIR (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTT=0./0 (ALFA)
-=0.15667/94 (NorthernSweden)
HGVS:: NC_000019.10:g.46622991_46622999del, NC_000019.10:g.46622992_46622999del, NC_000019.10:g.46622993_46622999del, NC_000019.10:g.46622994_46622999del, NC_000019.10:g.46622995_46622999del, NC_000019.10:g.46622996_46622999del, NC_000019.10:g.46622997_46622999del, NC_000019.10:g.46622998_46622999del, NC_000019.10:g.46622999del, NC_000019.10:g.46622999dup, NC_000019.10:g.46622998_46622999dup, NC_000019.10:g.46622997_46622999dup, NC_000019.10:g.46622995_46622999dup, NC_000019.10:g.46622981_46622999dup, NC_000019.9:g.47126248_47126256del, NC_000019.9:g.47126249_47126256del, NC_000019.9:g.47126250_47126256del, NC_000019.9:g.47126251_47126256del, NC_000019.9:g.47126252_47126256del, NC_000019.9:g.47126253_47126256del, NC_000019.9:g.47126254_47126256del, NC_000019.9:g.47126255_47126256del, NC_000019.9:g.47126256del, NC_000019.9:g.47126256dup, NC_000019.9:g.47126255_47126256dup, NC_000019.9:g.47126254_47126256dup, NC_000019.9:g.47126252_47126256dup, NC_000019.9:g.47126238_47126256dup

Select item 14913180463.

rs1491318046 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 19:46619641 (GRCh38)
19:47122898 (GRCh37)
Canonical SPDI:: NC_000019.10:46619639:AGA:A
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000019.10:g.46619641_46619642del, NC_000019.9:g.47122898_47122899del

Select item 14912441184.

rs1491244118 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AT [Show Flanks]
Chromosome:: 19:46622981 (GRCh38)
19:47126239 (GRCh37)
Canonical SPDI:: NC_000019.10:46622981:T:TAT
Gene:: PTGIR (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAT=0./0 (ALFA)
TA=0.00214/153 (GnomAD)
HGVS:: NC_000019.10:g.46622982_46622983insAT, NC_000019.9:g.47126239_47126240insAT

Select item 14911807785.

rs1491180778 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 19:46619546 (GRCh38)
19:47122804 (GRCh37)
Canonical SPDI:: NC_000019.10:46619546::G
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.00004/1 (TOMMO)
G=0.00097/54 (GnomAD)
HGVS:: NC_000019.10:g.46619546_46619547insG, NC_000019.9:g.47122803_47122804insG

Select item 14911395086.

rs1491139508 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GGAAAGAAAGAA [Show Flanks]
Chromosome:: 19:46619640 (GRCh38)
19:47122898 (GRCh37)
Canonical SPDI:: NC_000019.10:46619640:GAAAGAAAGAA:GAAAGAAAGAAGGAAAGAAAGAA
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GAAAGAAAGAAGGAAAGAAAGAA=0./0 (ALFA)
GAAAGAAAGAAG=0.000047/6 (GnomAD)
HGVS:: NC_000019.10:g.46619641_46619651GAAA[2]GAAGGAAAGAAAGAA[1], NC_000019.9:g.47122898_47122908GAAA[2]GAAGGAAAGAAAGAA[1]

Select item 14910647277.

rs1491064727 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 19:46619518 (GRCh38)
19:47122776 (GRCh37)
Canonical SPDI:: NC_000019.10:46619518::G
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.00026/4 (TOMMO)
G=0.00174/3 (Korea1K)
G=0.01027/6 (NorthernSweden)
HGVS:: NC_000019.10:g.46619518_46619519insG, NC_000019.9:g.47122775_47122776insG

Select item 14910263288.

rs1491026328 has merged into rs56961349 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,T,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 19:46618028 (GRCh38)
19:47121285 (GRCh37)
Canonical SPDI:: NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:46618014:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.03/18 (NorthernSweden)
HGVS:: NC_000019.10:g.46618028_46618032del, NC_000019.10:g.46618029_46618032del, NC_000019.10:g.46618030_46618032del, NC_000019.10:g.46618031_46618032del, NC_000019.10:g.46618032del, NC_000019.10:g.46618032dup, NC_000019.10:g.46618031_46618032dup, NC_000019.10:g.46618030_46618032dup, NC_000019.10:g.46618029_46618032dup, NC_000019.10:g.46618028_46618032dup, NC_000019.10:g.46618027_46618032dup, NC_000019.10:g.46618026_46618032dup, NC_000019.10:g.46618024_46618032dup, NC_000019.10:g.46618023_46618032dup, NC_000019.9:g.47121285_47121289del, NC_000019.9:g.47121286_47121289del, NC_000019.9:g.47121287_47121289del, NC_000019.9:g.47121288_47121289del, NC_000019.9:g.47121289del, NC_000019.9:g.47121289dup, NC_000019.9:g.47121288_47121289dup, NC_000019.9:g.47121287_47121289dup, NC_000019.9:g.47121286_47121289dup, NC_000019.9:g.47121285_47121289dup, NC_000019.9:g.47121284_47121289dup, NC_000019.9:g.47121283_47121289dup, NC_000019.9:g.47121281_47121289dup, NC_000019.9:g.47121280_47121289dup

Select item 14908635739.

rs1490863573 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:46618971 (GRCh38)
19:47122228 (GRCh37)
Canonical SPDI:: NC_000019.10:46618970:T:C
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.46618971T>C, NC_000019.9:g.47122228T>C

Select item 149085881810.

rs1490858818 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAGAAAGAAA>- [Show Flanks]
Chromosome:: 19:46619539 (GRCh38)
19:47122796 (GRCh37)
Canonical SPDI:: NC_000019.10:46619537:AAAGAAAGAAA:A
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00034/4 (ALFA)
-=0.00448/236 (GnomAD)
-=0.00626/11 (Korea1K)
-=0.01505/230 (TOMMO)
HGVS:: NC_000019.10:g.46619539_46619548del, NC_000019.9:g.47122796_47122805del

Select item 149059179011.

rs1490591790 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:46612151 (GRCh38)
19:47115408 (GRCh37)
Canonical SPDI:: NC_000019.10:46612150:G:T
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.46612151G>T, NC_000019.9:g.47115408G>T, NG_051331.1:g.16078G>T

Select item 149043857412.

rs1490438574 [Homo sapiens]

Variant type:: DEL
Alleles:: TTTTG>- [Show Flanks]
Chromosome:: 19:46613057 (GRCh38)
19:47116314 (GRCh37)
Canonical SPDI:: NC_000019.10:46613056:TTTTG:
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00169/46 (TOMMO)
HGVS:: NC_000019.10:g.46613057_46613061del, NC_000019.9:g.47116314_47116318del

Select item 149025108213.

rs1490251082 [Homo sapiens]

Variant type:: DEL
Alleles:: TTTTTTTTTTTTG>- [Show Flanks]
Chromosome:: 19:46613049 (GRCh38)
19:47116306 (GRCh37)
Canonical SPDI:: NC_000019.10:46613048:TTTTTTTTTTTTG:
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00017/2 (ALFA)
HGVS:: NC_000019.10:g.46613049_46613061del, NC_000019.9:g.47116306_47116318del

Select item 149024183614.

rs1490241836 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:46622615 (GRCh38)
19:47125872 (GRCh37)
Canonical SPDI:: NC_000019.10:46622614:T:C
Gene:: PTGIR (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.46622615T>C, NC_000019.9:g.47125872T>C

Select item 149016214915.

rs1490162149 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:46626228 (GRCh38)
19:47129485 (GRCh37)
Canonical SPDI:: NC_000019.10:46626227:T:C
Gene:: PTGIR (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.46626228T>C, NC_000019.9:g.47129485T>C

Select item 148998942916.

rs1489989429 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:46610554 (GRCh38)
19:47113811 (GRCh37)
Canonical SPDI:: NC_000019.10:46610553:A:G
Gene:: CALM3 (Varview), PTGIR (Varview), LOC124904729 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000216/4 (ALFA)
G=0.000047/6 (GnomAD)
G=0.00067/3 (Estonian)
HGVS:: NC_000019.10:g.46610554A>G, NC_000019.9:g.47113811A>G, NG_051331.1:g.14481A>G, NM_005184.4:c.*1401A>G, NM_005184.3:c.*1401A>G, NM_005184.2:c.*1401A>G, NM_001329924.2:c.*1401A>G, NM_001329924.1:c.*1401A>G, NM_001329926.2:c.*1401A>G, NM_001329926.1:c.*1401A>G, NM_001329925.2:c.*1401A>G, NM_001329925.1:c.*1401A>G, NM_001329922.1:c.*1401A>G, NM_001329921.1:c.*1401A>G, NM_001329923.1:c.*1401A>G

Select item 148997518217.

rs1489975182 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:46613353 (GRCh38)
19:47116610 (GRCh37)
Canonical SPDI:: NC_000019.10:46613352:C:A
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000019.10:g.46613353C>A, NC_000019.9:g.47116610C>A

Select item 148981729518.

rs1489817295 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:46624499 (GRCh38)
19:47127756 (GRCh37)
Canonical SPDI:: NC_000019.10:46624498:G:A
Gene:: PTGIR (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.46624499G>A, NC_000019.9:g.47127756G>A

Select item 148970830519.

rs1489708305 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:46617337 (GRCh38)
19:47120594 (GRCh37)
Canonical SPDI:: NC_000019.10:46617336:T:C
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000019.10:g.46617337T>C, NC_000019.9:g.47120594T>C

Select item 148963597620.

rs1489635976 [Homo sapiens]

Variant type:: DEL
Alleles:: GAGAG>- [Show Flanks]
Chromosome:: 19:46619579 (GRCh38)
19:47122836 (GRCh37)
Canonical SPDI:: NC_000019.10:46619578:GAGAG:
Gene:: PTGIR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00059/7 (ALFA)
-=0.0006/61 (GnomAD)
-=0.014385/240 (TOMMO)
HGVS:: NC_000019.10:g.46619579_46619583del, NC_000019.9:g.47122836_47122840del

<< First< Prev

Page of 243

Next >Last >>

dbSNP

Result Filters

Clinical Significance

Validation Status

Publication

Function Class

Variation Class

Annotation

Global MAF

Custom range

Additional filters

Display Settings:

Send to:

Links from Gene

Items: 1 to 20 of 4848

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity