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config.yml
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config.yml
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---
versions:
release:
version_number: "3.10" # change this at release time
r_url: "https://cran.rstudio.com/src/base/R-latest.tar.gz"
parent: "rocker/rstudio:3.6.2"
use_r_devel: false # should always be false
devel:
version_number: "3.11" # change this at release time
## IMPORTANT: Change r_url at release time if new bioc devel does(not) use R-devel
#parent: "rocker/rstudio:3.6.1"
parent: "rocker/rstudio:devel"
# currently known bug/issue in rocker/rstudio-daily
#"rocker/rstudio-daily" # should be rocker/rstudio-daily if
# use_r_devel is true, otherwise
# rocker/rstudio
use_r_devel: false # true half the year
# The following variable (use_numbered_branch) is only relevant if
# use_r_devel is true.
# use_numbered_branch should be false OR should be the (quoted) version number from
# which to pull R. Set to false if you want to use the default R installed
# by rocker, which pulls from trunk. Or set to a number (i.e. 3.2) to
# install R from that branch. This is appropriate when R-devel becomes R-alpha.
# For example, around March 19th, 2015, an R-3-2-branch was created and
# the R in trunk became R-3.3. However, the contemporaneous Bioconductor
# devel branch uses R-3.2, NOT 3.3, so we would set the below variable
# to "3.2" (be sure to quote the value so it's forced to be a string).
use_numbered_branch: false
containers: # FIXME (?) rename this to 'images' (?)
base:
parent: bogus
core:
parent: bioconductor/base
mscore:
parent: bioconductor/base
protmetcore:
parent: bioconductor/mscore
biocViews:
- Metabolomics
- Proteomics
metabolomics:
parent: bioconductor/protmetcore
biocViews:
- Metabolomics
protcore:
parent: bioconductor/protmetcore
proteomics:
parent: bioconductor/protcore
biocViews:
- Proteomics
- MassSpectrometryData
cytometry:
parent: bioconductor/base
biocViews:
- FlowCytometry