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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


Research Interest

Microecological Analysis and Intervention

Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677).

Bioinformaitcs tool development

The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 994 252

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 824 173

  3. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 215 74

  4. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 174 37

  5. ProjectYulab ProjectYulab Public

    ⏭️ Small coding tasks that enable you to participate in our development

    33 3

  6. plotbb plotbb Public

    🖌️ Grammar of Graphics for base plot

    R 52 7

Repositories

Showing 10 of 91 repositories
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 994 252 314 1 Updated Aug 22, 2024
  • fanyi Public

    Translate Words or Sentences via Online Translators

    YuLab-SMU/fanyi’s past year of commit activity
    R 44 6 5 0 Updated Aug 21, 2024
  • meshes Public

    🩺 MeSH Enrichment and Semantic analyses

    YuLab-SMU/meshes’s past year of commit activity
    R 11 4 2 1 Updated Aug 21, 2024
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE’s past year of commit activity
    R 110 35 22 2 Updated Aug 21, 2024
  • GOSemSim Public

    ⛳ GO-terms Semantic Similarity Measures

    YuLab-SMU/GOSemSim’s past year of commit activity
    R 58 26 15 0 Updated Aug 21, 2024
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 12 4 0 0 Updated Aug 21, 2024
  • yulab.utils Public

    Miscellaneous functions commonly used by 'YuLab-SMU'.

    YuLab-SMU/yulab.utils’s past year of commit activity
    R 30 10 0 0 Updated Aug 21, 2024
  • ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    YuLab-SMU/ChIPseeker’s past year of commit activity
    R 215 74 100 1 Updated Aug 20, 2024
  • ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    YuLab-SMU/ggtree’s past year of commit activity
    R 824 173 156 0 Updated Aug 20, 2024
  • treeio Public

    🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

    YuLab-SMU/treeio’s past year of commit activity
    R 94 24 25 1 Updated Aug 20, 2024

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