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    154 repositories

    • icn3d

      Public
      web-based protein structure viewer and analysis tool interactively or in batch mode
      JavaScript
      Other
      4214661Updated Jun 25, 2024Jun 25, 2024
    • datasets

      Public
      NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
      Jupyter Notebook
      Other
      39327210Updated Jun 25, 2024Jun 25, 2024
    • NCBI C++ Toolkit package sources
      C++
      Other
      184510Updated Jun 25, 2024Jun 25, 2024
    • pgap

      Public
      NCBI Prokaryotic Genome Annotation Pipeline
      Common Workflow Language
      Other
      8829261Updated Jun 25, 2024Jun 25, 2024
    • vadr

      Public
      Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
      Perl
      Other
      2291110Updated Jun 24, 2024Jun 24, 2024
    • ncbi-vdb

      Public
      ncbi-vdb
      C
      Other
      3889101Updated Jun 24, 2024Jun 24, 2024
    • stxtyper

      Public
      StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
      C++
      Other
      1200Updated Jun 24, 2024Jun 24, 2024
    • tree-tool

      Public
      Incremental building of phylogenetic distance tree
      C++
      Other
      71301Updated Jun 23, 2024Jun 23, 2024
    • TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
      C++
      Other
      34123160Updated Jun 21, 2024Jun 21, 2024
    • dbsnp

      Public
      dbSNP
      Jupyter Notebook
      4611892Updated Jun 21, 2024Jun 21, 2024
    • fcs-gx

      Public
      Foreign Contamination Screening - GX source code
      C++
      Other
      4910Updated Jun 21, 2024Jun 21, 2024
    • Log monitoring and gathering infrastructure to feed analytics
      C++
      8601Updated Jun 21, 2024Jun 21, 2024
    • HTML
      The Unlicense
      521800Updated Jun 20, 2024Jun 20, 2024
    • sra-tools

      Public
      SRA Tools
      C
      Other
      2441.1k704Updated Jun 20, 2024Jun 20, 2024
    • ngs-tools

      Public
      C++
      Other
      28102104Updated Jun 18, 2024Jun 18, 2024
    • fcs

      Public
      Foreign Contamination Screening caller scripts and documentation
      Other
      1287140Updated Jun 18, 2024Jun 18, 2024
    • Conan package recipe for NCBI VDB Toolkit
      Python
      1000Updated Jun 11, 2024Jun 11, 2024
    • amr

      Public
      AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
      C++
      Other
      34252100Updated Jun 6, 2024Jun 6, 2024
    • NCBI C++ Toolkit package recipe
      Python
      8400Updated Jun 5, 2024Jun 5, 2024
    • BioREx

      Public
      Python
      92240Updated May 22, 2024May 22, 2024
    • docker

      Public
      Dockerfile
      Other
      324620Updated May 21, 2024May 21, 2024
    • clinvar

      Public
      ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or comments.
      HTML
      126040Updated May 16, 2024May 16, 2024
    • rapt

      Public
      Read Assembly and Annotation Pipeline Tool
      1753130Updated May 16, 2024May 16, 2024
    • egapx

      Public
      Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
      Nextflow
      Other
      11930Updated May 9, 2024May 9, 2024
    • The documentation repository for the dbGaP FHIR API.
      Jupyter Notebook
      Other
      3450Updated May 8, 2024May 8, 2024
    • Python
      1000Updated Apr 22, 2024Apr 22, 2024
    • osiris

      Public
      OSIRIS is a public domain quality assurance software package that facilitates the assessment of multiplex short tandem repeat (STR) DNA profiles based on laboratory-specific protocols. OSIRIS evaluates the raw electrophoresis data contained in .fsa or .hid files using an independently derived mathematically-based sizing algorithm. OSIRIS current…
      C++
      212600Updated Apr 10, 2024Apr 10, 2024
    • histonedb

      Public
      JavaScript
      10204Updated Apr 5, 2024Apr 5, 2024
    • MedCPT

      Public
      Code for MedCPT, a model for zero-shot biomedical information retrieval.
      Python
      Other
      1111100Updated Mar 24, 2024Mar 24, 2024
    • Jupyter Notebook
      Other
      4110Updated Feb 27, 2024Feb 27, 2024
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