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openmicroscopy Public
Forked from ome/openmicroscopyOME (Open Microscopy Environment)
Java GNU General Public License v2.0 UpdatedApr 19, 2024 -
anndata Public
Forked from scverse/anndataAnnotated data.
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 5, 2024 -
spacexr Public
Forked from dmcable/spacexrSpatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
HTML GNU General Public License v3.0 UpdatedMar 4, 2024 -
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abscr Public
Forked from imbg-ua/abscrJupyter Notebook GNU General Public License v3.0 UpdatedAug 24, 2023 -
spatialdata-io Public
Forked from scverse/spatialdata-ioPython BSD 3-Clause "New" or "Revised" License UpdatedJun 4, 2023 -
fastq_utils Public
Forked from nunofonseca/fastq_utilsValidation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
C GNU General Public License v3.0 UpdatedMar 25, 2023 -
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CellBender Public
Forked from broadinstitute/CellBenderCellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 10, 2022 -
ULTRA Public
Forked from TravisWheelerLab/ULTRAULTRA Locates Tandemly Repetitive Areas
C++ BSD 3-Clause "New" or "Revised" License UpdatedDec 7, 2022 -
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hello Public
Forked from nextflow-io/helloClassic hello world script in Nextflow language
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cellxgene Public
Forked from chanzuckerberg/cellxgeneAn interactive explorer for single-cell transcriptomics data
JavaScript MIT License UpdatedJun 7, 2022 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedJun 1, 2022 -
configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedMay 31, 2022 -
atacseq Public
Forked from nf-core/atacseqATAC-seq peak-calling, QC and differential analysis pipeline
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celltypist_wiki Public
Forked from Teichlab/celltypist_wikiMaterials and scripts for building cell type encyclopedia table
Python UpdatedNov 2, 2021 -
cell2location Public
Forked from BayraktarLab/cell2locationComprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
Python Apache License 2.0 UpdatedSep 3, 2021 -
geosketch Public
Forked from brianhie/geosketchGeometry-preserving random sampling
Python MIT License UpdatedAug 24, 2021 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedAug 24, 2021 -
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bsub_jupyter_lab Public
Forked from wtsi-hgi/bsub_jupyter_labstart jupyterlab python and R server on LSF farm5 node via bsub
Python UpdatedMay 24, 2021 -
sceasy Public
Forked from cellgeni/sceasyA package to help convert different single-cell data formats to each other
R GNU General Public License v3.0 UpdatedMar 18, 2021 -
jupyter-remote-desktop-proxy Public
Forked from jupyterhub/jupyter-remote-desktop-proxyRun a Linux Desktop on a JupyterHub
JavaScript BSD 3-Clause "New" or "Revised" License UpdatedMar 11, 2021 -
jupyterhub-the-hard-way Public
Forked from jupyterhub/jupyterhub-the-hard-wayUnderstanding JupyterHub by deploying it step by step
UpdatedMar 8, 2021 -
librdata Public
Forked from WizardMac/librdataRead and write R data frames from C
C MIT License UpdatedFeb 23, 2021 -
science-gateway Public
Forked from Unidata/science-gatewayUnidata Science Gateway
TeX UpdatedFeb 9, 2021 -