The International Protein Index: an integrated database for proteomics experiments
- PMID: 15221759
- DOI: 10.1002/pmic.200300721
The International Protein Index: an integrated database for proteomics experiments
Abstract
Despite the complete determination of the genome sequence of several higher eukaryotes, their proteomes remain relatively poorly defined. Information about proteins identified by different experimental and computational methods is stored in different databases, meaning that no single resource offers full coverage of known and predicted proteins. IPI (the International Protein Index) has been developed to address these issues and offers complete nonredundant data sets representing the human, mouse and rat proteomes, built from the Swiss-Prot, TrEMBL, Ensembl and RefSeq databases.
Similar articles
-
Bioinformatics Tools for Proteomics Data Interpretation.Adv Exp Med Biol. 2016;919:281-341. doi: 10.1007/978-3-319-41448-5_16. Adv Exp Med Biol. 2016. PMID: 27975225 Review.
-
Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches.Proteins. 2005 Jan 1;58(1):166-79. doi: 10.1002/prot.20298. Proteins. 2005. PMID: 15521074
-
Interpretive proteomics--finding biological meaning in genome and proteome databases.Adv Enzyme Regul. 2003;43:271-359. doi: 10.1016/s0065-2571(02)00024-9. Adv Enzyme Regul. 2003. PMID: 12791396 Review. No abstract available.
-
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.Genome Res. 2003 Apr;13(4):662-72. doi: 10.1101/gr.461403. Epub 2003 Mar 12. Genome Res. 2003. PMID: 12654719 Free PMC article.
-
High-quality protein knowledge resource: SWISS-PROT and TrEMBL.Brief Bioinform. 2002 Sep;3(3):275-84. doi: 10.1093/bib/3.3.275. Brief Bioinform. 2002. PMID: 12230036
Cited by
-
Post-translational control of beige fat biogenesis by PRDM16 stabilization.Nature. 2022 Sep;609(7925):151-158. doi: 10.1038/s41586-022-05067-4. Epub 2022 Aug 17. Nature. 2022. PMID: 35978186 Free PMC article.
-
Endocytic membrane repair by ESCRT-III controls antigen export to the cytosol during antigen cross-presentation.Cell Rep. 2022 Aug 16;40(7):111205. doi: 10.1016/j.celrep.2022.111205. Cell Rep. 2022. PMID: 35977488 Free PMC article.
-
GPCR19 Regulates P2X7R-Mediated NLRP3 Inflammasomal Activation of Microglia by Amyloid β in a Mouse Model of Alzheimer's Disease.Front Immunol. 2022 Apr 6;13:766919. doi: 10.3389/fimmu.2022.766919. eCollection 2022. Front Immunol. 2022. PMID: 35464490 Free PMC article.
-
Studies on Novel Diagnostic and Predictive Biomarkers of Intrahepatic Cholestasis of Pregnancy Through Metabolomics and Proteomics.Front Immunol. 2021 Oct 14;12:733225. doi: 10.3389/fimmu.2021.733225. eCollection 2021. Front Immunol. 2021. PMID: 34721396 Free PMC article.
-
Urine peptidome analysis in cardiorenal syndrome reflects molecular processes.Sci Rep. 2021 Aug 10;11(1):16219. doi: 10.1038/s41598-021-95695-z. Sci Rep. 2021. PMID: 34376786 Free PMC article.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources