Nr2f1 (nuclear receptor subfamily 2 group F member 1) - Rat Genome Database

Nr2f1 (nuclear receptor subfamily 2 group F member 1) - Rat Genome Database

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Gene: Nr2f1 (nuclear receptor subfamily 2 group F member 1) Ictidomys tridecemlineatus

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Symbol:

Nr2f1

Name:

nuclear receptor subfamily 2 group F member 1

RGD ID:

12516068

Description:

ENCODES a protein that exhibits retinoic acid-responsive element binding (ortholog); INVOLVED IN cerebral cortex regionalization (ortholog); forebrain development (ortholog); interneuron migration (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Bosch-Boonstra-Schaaf optic atrophy syndrome (ortholog); Breast Neoplasms (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

Previously known as:

COUP transcription factor 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	171,322,457 - 171,331,829 (-)	NCBI		HiC_Itri_2			SpeTri2.0 Ensembl	NW_004936523	9,507,965 - 9,517,272 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl			SpeTri2.0	NW_004936523	9,508,204 - 9,517,266 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Object Symbol

Species

Term

Qualifier

Evidence

With

Reference

Notes

Source

Original Reference(s)

Squirrel

autism spectrum disorder

NR2F1 (Homo sapiens)

ClinVar Annotator: match by term: Autism spectrum disorder

ClinVar

Squirrel

Bosch-Boonstra-Schaaf optic atrophy syndrome

NR2F1 (Homo sapiens)

ClinVar Annotator: match by term: Bosch-Boonstra-Schaaf optic atrophy syndrome

ClinVar

PMID:18414213 more ...

Squirrel

Developmental Disabilities

NR2F1 (Homo sapiens)

ClinVar Annotator: match by term: Global developmental delay

ClinVar

Squirrel

NR2F1 (Homo sapiens)

ClinVar Annotator: match by term: Seizure

ClinVar

Squirrel

familial adenomatous polyposis 1

NR2F1 (Homo sapiens)

ClinVar Annotator: match by term: Familial adenomatous polyposis 1

ClinVar

PMID:17963004 more ...

Squirrel

genetic disease

NR2F1 (Homo sapiens)

ClinVar Annotator: match by term: Inborn genetic diseases

ClinVar

PMID:25741868 more ...

Squirrel

Hereditary Neoplastic Syndromes

NR2F1 (Homo sapiens)

ClinVar Annotator: match by term: Hereditary cancer-predisposing syndrome

ClinVar

PMID:17963004 more ...

Squirrel

Neurodevelopmental Disorders

NR2F1 (Homo sapiens)

ClinVar Annotator: match by term: Neurodevelopmental disorder

ClinVar

Imported Disease Annotations - CTD

Object Symbol

Species

Term

Qualifier

Evidence

With

Reference

Notes

Source

Original Reference(s)

Squirrel

Breast Neoplasms

NR2F1 (Homo sapiens)

CTD Direct Evidence: marker/mechanism

CTD

Squirrel

NR2F1 (Homo sapiens)

CTD Direct Evidence: marker/mechanism

CTD

Imported Disease Annotations - OMIM

Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)Nr2f1SquirrelBosch-Boonstra-Schaaf optic atrophy syndrome ISO NR2F1 (Homo sapiens)7240710 OMIM

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)Nr2f1Squirrelcell differentiation involved_inIEA PANTHER:PTN000638964 and PANTHER:PTN002786784 150520179 TreeGrafterGO_REF:0000118Nr2f1Squirrelcerebral cortex regionalization acts_upstream_of_or_withinISO MGI:3521756 9068941 PMID:17828260MGIPMID:17828260 Nr2f1Squirrelforebrain development acts_upstream_of_or_withinISO Nr2f1 (Mus musculus)9068941 PMID:15548577MGIPMID:15548577 Nr2f1Squirrelinterneuron migration acts_upstream_of_or_withinISO Nr2f1 (Mus musculus)9068941 PMID:15548577MGIPMID:15548577 Nr2f1Squirrelintracellular receptor signaling pathway involved_inIEAGO:0004879150520179 GOCGO_REF:0000108Nr2f1Squirrelnegative regulation of neuron projection development ISO Nr2f1 (Rattus norvegicus)9068941 RGDPMID:7797489 and REF_RGD_ID:633499 Nr2f1Squirrelnegative regulation of transcription by RNA polymerase II involved_inIEA PANTHER:PTN000638964 and PANTHER:PTN002786784 150520179 TreeGrafterGO_REF:0000118Nr2f1Squirrelnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISO Nr2f1 (Mus musculus)9068941 PMID:7823919MGIPMID:7823919 Nr2f1Squirrelnegative regulation of transcription by RNA polymerase II involved_inIEA UniProtKB:P10589 and ensembl:ENSP00000325819150520179 EnsemblGO_REF:0000107Nr2f1Squirrelnervous system development ISO Nr2f1 (Rattus norvegicus)9068941 RGDPMID:7797489 and REF_RGD_ID:633499 Nr2f1Squirrelneuron migration acts_upstream_of_or_withinISO Nr2f1 (Mus musculus)9068941 PMID:15548577MGIPMID:15548577 Nr2f1Squirrelpositive regulation of miRNA transcription acts_upstream_of_or_withinISO MGI:2385930 9068941 PMID:24349493MGIPMID:24349493 Nr2f1Squirrelpositive regulation of transcription by RNA polymerase II ISO Nr2f1 (Rattus norvegicus)9068941 RGDPMID:7797489 and REF_RGD_ID:633499 Nr2f1Squirrelpositive regulation of transcription by RNA polymerase II involved_inIEA PANTHER:PTN000638964 and PANTHER:PTN002786784 150520179 TreeGrafterGO_REF:0000118Nr2f1Squirrelregulation of DNA-templated transcription involved_inIEA InterPro:IPR001628 and InterPro:IPR013088 150520179 InterProGO_REF:0000002Nr2f1Squirrelregulation of gene expression acts_upstream_of_or_withinISO MGI:2676825 9068941 PMID:24349493MGIPMID:24349493

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)Nr2f1Squirrelcytosol located_inIEA UniProtKB:P10589 and ensembl:ENSP00000325819150520179 EnsemblGO_REF:0000107Nr2f1Squirrelnucleoplasm located_inIEA UniProtKB:P10589 and ensembl:ENSP00000325819150520179 EnsemblGO_REF:0000107Nr2f1Squirrelnucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044Nr2f1Squirrelnucleus located_inIEA UniProtKB-KW:KW-0539 150520179 UniProtGO_REF:0000043Nr2f1Squirrelnucleus located_inIEA UniProtKB:P10589 and ensembl:ENSP00000325819150520179 EnsemblGO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)Nr2f1SquirrelDNA binding enablesIEA UniProtKB-KW:KW-0238 150520179 UniProtGO_REF:0000043Nr2f1SquirrelDNA-binding transcription factor activity enablesIEA UniProtKB:P10589 and ensembl:ENSP00000325819150520179 EnsemblGO_REF:0000107Nr2f1SquirrelDNA-binding transcription factor activity enablesIEA InterPro:IPR001628 150520179 InterProGO_REF:0000002Nr2f1SquirrelDNA-binding transcription repressor activity, RNA polymerase II-specific enablesIEA UniProtKB:P10589 and ensembl:ENSP00000325819150520179 EnsemblGO_REF:0000107Nr2f1Squirrelmetal ion binding enablesIEA UniProtKB-KW:KW-0479 150520179 UniProtGO_REF:0000043Nr2f1Squirrelnuclear receptor activity enablesIEA PANTHER:PTN000638964 and PANTHER:PTN002786784 150520179 TreeGrafterGO_REF:0000118Nr2f1Squirrelprotein binding enablesISO UniProtKB:Q00403 9068941 PMID:1517211UniProtPMID:1517211 Nr2f1Squirrelprotein binding enablesISO UniProtKB:P61374 9068941 PMID:11043578BHF-UCLPMID:11043578 Nr2f1Squirrelretinoic acid-responsive element binding ISO Nr2f1 (Rattus norvegicus)9068941 RGDPMID:7797489 and REF_RGD_ID:633499 Nr2f1SquirrelRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIEA PANTHER:PTN000638964 and PANTHER:PTN002786784 150520179 TreeGrafterGO_REF:0000118Nr2f1SquirrelRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIEA UniProtKB:P10589 and ensembl:ENSP00000325819150520179 EnsemblGO_REF:0000107Nr2f1Squirrelsequence-specific DNA binding enablesIEA UniProtKB:P10589 and ensembl:ENSP00000325819150520179 EnsemblGO_REF:0000107Nr2f1Squirrelsequence-specific DNA binding enablesIEA InterPro:IPR001628 150520179 InterProGO_REF:0000002Nr2f1Squirrelsequence-specific double-stranded DNA binding enablesIEA UniProtKB:P10589 and ensembl:ENSP00000325819150520179 EnsemblGO_REF:0000107Nr2f1Squirrelzinc ion binding enablesIEA InterPro:IPR001628 and InterPro:IPR013088 150520179 InterProGO_REF:0000002

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Bosch-Boonstra-Schaaf optic atrophy syndrome (ISO)

Breast Neoplasms (ISO)

Developmental Disabilities (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

ovarian cyst (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

cerebral cortex regionalization (ISO)

forebrain development (ISO)

interneuron migration (ISO)

intracellular receptor signaling pathway (IEA)

negative regulation of neuron projection development (ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

nervous system development (ISO)

neuron migration (ISO)

positive regulation of miRNA transcription (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of gene expression (ISO)

Cellular Component

nucleoplasm (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

nuclear receptor activity (IEA)

protein binding (ISO)

retinoic acid-responsive element binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Nr2f1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	171,322,457 - 171,331,829 (-)	NCBI		HiC_Itri_2			SpeTri2.0 Ensembl	NW_004936523	9,507,965 - 9,517,272 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl			SpeTri2.0	NW_004936523	9,508,204 - 9,517,266 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NR2F1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	93,583,222 - 93,594,611 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38	GRCh38.p14 Ensembl	5	93,583,222 - 93,594,611 (+)	Ensembl	GRCh38		hg38	GRCh38	GRCh37	5	92,918,928 - 92,930,317 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37	Build 36	5	92,944,799 - 92,955,544 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36	Build 34	5	92,944,798 - 92,955,540	NCBI					Celera	5	88,778,440 - 88,789,186 (+)	NCBI		Celera			Cytogenetic Map	5	q15	NCBI					HuRef	5	88,092,169 - 88,102,739 (+)	NCBI		HuRef			CHM1_1	5	92,351,749 - 92,362,489 (+)	NCBI		CHM1_1			T2T-CHM13v2.0	5	94,067,283 - 94,078,673 (+)	NCBI		T2T-CHM13v2.0

Nr2f1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	78,337,090 - 78,346,954 (-)	NCBI	GRCm39	GRCm39	mm39		GRCm39 Ensembl	13	78,337,092 - 78,347,876 (-)	Ensembl		GRCm39 Ensembl			GRCm38	13	78,188,971 - 78,198,873 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38	GRCm38.p6 Ensembl	13	78,188,973 - 78,199,757 (-)	Ensembl	GRCm38		mm10	GRCm38	MGSCv37	13	78,328,234 - 78,338,243 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37	MGSCv36	13	78,652,524 - 78,662,420 (-)	NCBI		MGSCv36	mm8		Celera	13	80,475,542 - 80,485,460 (-)	NCBI		Celera			Cytogenetic Map	13	C1	NCBI					cM Map	13	41.38	NCBI

Nr2f1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	9,776,179 - 9,785,924 (-)	NCBI		GRCr8			mRatBN7.2	2	8,040,375 - 8,050,123 (-)	NCBI	mRatBN7.2	mRatBN7.2			mRatBN7.2 Ensembl	2	8,040,377 - 8,050,123 (-)	Ensembl		mRatBN7.2 Ensembl			UTH_Rnor_SHR_Utx	2	15,156,212 - 15,165,958 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx			UTH_Rnor_SHRSP_BbbUtx_1.0	2	13,255,522 - 13,265,268 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0			UTH_Rnor_WKY_Bbb_1.0	2	7,905,787 - 7,915,533 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0			Rnor_6.0	2	5,569,954 - 5,579,894 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0	Rnor_6.0 Ensembl	2	5,569,935 - 5,579,894 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0	Rnor_5.0	2	5,553,211 - 5,563,152 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0	RGSC_v3.4	2	5,765,399 - 5,794,104 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4	RGSC_v3.1	2	5,791,963 - 5,820,665 (-)	NCBI					Celera	2	4,489,100 - 4,498,590 (-)	NCBI		Celera			Cytogenetic Map	2	q11	NCBI

Nr2f1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	18,614,995 - 18,624,584 (-)	Ensembl	ChiLan1.0				ChiLan1.0	NW_004955418	18,615,548 - 18,622,984 (-)	NCBI	ChiLan1.0	ChiLan1.0

NR2F1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	21,798,293 - 21,808,047 (-)	NCBI		NHGRI_mPanPan1-v2			NHGRI_mPanPan1	5	19,951,902 - 19,964,301 (-)	NCBI		NHGRI_mPanPan1			Mhudiblu_PPA_v0	5	21,773,283 - 21,785,746 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3		PanPan1.1	5	21,909,691 - 21,918,776 (-)	NCBI	panpan1.1	PanPan1.1	panPan2		PanPan1.1 Ensembl	5	21,910,463 - 21,918,776 (-)	Ensembl	panpan1.1		panPan2

NR2F1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	15,707,198 - 15,716,875 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1	CanFam3.1 Ensembl	3	15,707,640 - 15,716,875 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1	Dog10K_Boxer_Tasha	3	17,056,142 - 17,065,912 (-)	NCBI		Dog10K_Boxer_Tasha			ROS_Cfam_1.0	3	15,603,857 - 15,613,637 (-)	NCBI		ROS_Cfam_1.0			ROS_Cfam_1.0 Ensembl	3	15,603,875 - 15,613,542 (-)	Ensembl		ROS_Cfam_1.0 Ensembl			UMICH_Zoey_3.1	3	15,559,980 - 15,569,747 (-)	NCBI		UMICH_Zoey_3.1			UNSW_CanFamBas_1.0	3	15,546,214 - 15,555,980 (-)	NCBI		UNSW_CanFamBas_1.0			UU_Cfam_GSD_1.0	3	15,764,483 - 15,774,264 (-)	NCBI		UU_Cfam_GSD_1.0

NR2F1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	100,447,705 - 100,457,506 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1	Sscrofa11.1	2	100,447,661 - 100,457,510 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1	Sscrofa10.2	2	103,839,017 - 103,848,870 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NR2F1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	87,463,514 - 87,475,900 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2		ChlSab1.1 Ensembl	4	87,466,249 - 87,475,112 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2		Vero_WHO_p1.0	NW_023666049	36,657,859 - 36,670,290 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nr2f1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	12,478,832 - 12,488,458 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2		HetGla 1.0	NW_004624743	12,479,427 - 12,488,178 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013358981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000015398 &xrArr; ENSSTOP00000013789

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936523	9,507,965 - 9,517,272 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036655 &xrArr; ENSSTOP00000032029

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936523	9,508,703 - 9,515,425 (-)	Ensembl

RefSeq Acc Id:

XM_013358981 &xrArr; XP_013214435

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	171,322,457 - 171,331,829 (-)	NCBI	SpeTri2.0	NW_004936523	9,508,204 - 9,517,266 (-)	NCBI

Sequence:

show sequence

GCCCGGTTCGGGCCAGAGCCAGCAGCATATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGC
AAGCACTACGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGA
ACTTAACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTG
CCAATACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAGCGGTTCAGCGAGGA
AGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCCCCTCAATG
GCCACTGCTACCTGTCTGGCTACATCTCGCTGCTGCTGCGCGCCGAACCCTACCCCACGTCGCG
CTATGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGCTGGCC
GCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCGGATCTGCAGA
TCACCGACCAGGTGTCCCTACTCCGCCTCACCTGGAGCGAGTTGTTCGTGCTCAACGCGGCCCA
GTGCTCCATGCCGCTGCACGTGGCACCGCTGCTGGCCGCCGCCGGCCTGCACGCCTCGCCCATG
TCCGCCGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTTCAGGAGCAGGTGGAGAAGC
TCAAGGCTCTGCACGTCGATTCCGCAGAGTACAGCTGCCTCAAAGCCATCGTGCTCTTCACGTC
AGATGCCTGTGGCCTGTCGGATGCCGCCCACATCGAAAGCCTGCAGGAGAAATCACAATGCGCA
CTGGAGGAATATGTGAGGAGCCAGTATCCCAACCAGCCCAGCCGCTTCGGCAAACTGCTGCTGC
GACTGCCCTCGCTCCGCACCGTGTCCTCCTCTGTCATCGAGCAGCTCTTCTTCGTCCGTTTGGT
AGGTAAAACCCCTATTGAAACTCTCATCCGAGATATGTTACTGTCTGGGAGCAGCTTCAACTGG
CCTTACATGTCCATCCAGTGCTCCTAGACCTTGGGTGCTTCCTGCCTGCCCCTGCCCCCACTAG
AAACTCAGAGGACTCATCCGGGCCAAGGACTCCAACGCCTCGGGGATTCTCCGGGTGTGGAGGA
CCAGGCAGGCCAGGCAGACCAGGCAGGGGAAAGAATGCTGGGGACAGGAGCAGCCCACCCTGCA
GAAATGCAACTGGAGCTGCAAACCAGGAGAAAAAGAAACTCTTTTAGGATCAGATCTATAAGCA
CGTTGCAAAGGAAAGAAAAAAGGATCTTATGTCTGGTGAGAAAATGAAAACATTTTTTTGGAAG
AGAGGACCATAAGAATTTTAATAAAACAGAAGGAGACCAATGGACCTTCCAGGATTTATTGTGG
ACGGATGTGGATATATTCTGTACAGAAAAACAACACATATGGAAATGGACTGAATCCTATGTAG
AAACACACATCACACACACACACACACACACACACACACACACACACACACTGAACATTGTTAT
TCATTTTGTAAAAT

hide sequence

RefSeq Acc Id:

XM_040272104 &xrArr; XP_040128038

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	171,322,457 - 171,329,737 (-)	NCBI

RefSeq Acc Id:

XM_040272105 &xrArr; XP_040128039

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	171,322,457 - 171,329,973 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013214435	(Get FASTA)	NCBI Sequence Viewer
	XP_040128038	(Get FASTA)	NCBI Sequence Viewer
	XP_040128039	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000013789.3
	ENSSTOP00000032029.1
GenBank Protein	KAG3266366	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013214435 &xlArr; XM_013358981

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIM
GIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLA
AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIE
SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM
LLSGSSFNWPYMSIQCS

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RefSeq Acc Id:	XP_040128039 &xlArr; XM_040272105
- Peptide Label:	isoform X3
- UniProtKB:	A0A287DES0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040128038 &xlArr; XM_040272104
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSSTOP00000032029 &xlArr; ENSSTOT00000036655

RefSeq Acc Id:

ENSSTOP00000013789 &xlArr; ENSSTOT00000015398

Protein Domains

NR LBD Nuclear receptor

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000015403	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000015398.3	UniProtKB/TrEMBL
	ENSSTOT00000036655.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.565.10	UniProtKB/TrEMBL
	3.30.50.10	UniProtKB/TrEMBL
InterPro	NHR-like_dom_sf	UniProtKB/TrEMBL
	Nucl_hrmn_rcpt_lig-bd	UniProtKB/TrEMBL
	Nuclear_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_NHR/GATA	UniProtKB/TrEMBL
NCBI Gene	Nr2f1	ENTREZGENE
PANTHER	COUP TRANSCRIPTION FACTOR 1	UniProtKB/TrEMBL
	NUCLEAR HORMONE RECEPTOR	UniProtKB/TrEMBL
Pfam	Hormone_recep	UniProtKB/TrEMBL
	zf-C4	UniProtKB/TrEMBL
PRINTS	COUPTNFACTOR	UniProtKB/TrEMBL
	STRDHORMONER	UniProtKB/TrEMBL
	STROIDFINGER	UniProtKB/TrEMBL
PROSITE	NR_LBD	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_1	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_2	UniProtKB/TrEMBL
SMART	HOLI	UniProtKB/TrEMBL
	ZnF_C4	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF48508	UniProtKB/TrEMBL
UniProt	A0A287DES0	ENTREZGENE, UniProtKB/TrEMBL
	I3MPN8_ICTTR	UniProtKB/TrEMBL

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